Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0284
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical...    29   4.2  
U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical ...    27   9.6  

>Z72508-6|CAA96643.1|  415|Caenorhabditis elegans Hypothetical
           protein F28H7.7 protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
 Frame = -2

Query: 387 WSFYPVFWLSIARTKHLI*S*LINNKYVMQMNS*FIYLVTKYSIINMKLILDKQ--YARN 214
           W      WL+    KH     ++NN+ V+QM    I+ V +Y+     LILD +  Y R+
Sbjct: 309 WELTTQPWLNCTDGKHCFSKMIVNNQKVLQM---MIHDVGEYNGNYQTLILDPKIGYIRH 365

Query: 213 Y 211
           Y
Sbjct: 366 Y 366


>AL117204-21|CAB55157.1|  712|Caenorhabditis elegans Hypothetical
           protein Y116A8C.33 protein.
          Length = 712

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -1

Query: 670 ISTGLAMSSCISKVKNDS*AVFLNIITIHCGFPEYYHN-----PLGFNNINQEISMVKIV 506
           IS+ L + +C+ K+KN+S AV   +  I         N     PL  +  + E+S VK +
Sbjct: 493 ISSELEVHNCLKKLKNNSEAVIRMVPLIQAFMRADLQNVQQIAPL-VSKFSHELSTVKTI 551

Query: 505 YAGRQEIVFPIT 470
               +E+  P+T
Sbjct: 552 PEKMREVASPVT 563


>U55372-1|AAA98002.2|  816|Caenorhabditis elegans Hypothetical
           protein C02G6.2 protein.
          Length = 816

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 279 YLVTKYSIINMKLILDKQYARNYTIRAS*KNTKEKINNSILKLDGRKLIVTKI 121
           YL+TKY+   +K +L      N  +R   K  KE+  N+   + G ++ VT I
Sbjct: 417 YLLTKYNPERIKELLSTLTPSNMLVRVVSKKFKEQEGNTNEPVYGTEMKVTDI 469


>AF000197-3|AAB52898.2|  109|Caenorhabditis elegans Hypothetical
           protein T21G5.2 protein.
          Length = 109

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/35 (37%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = +2

Query: 230 LSKINFIFMIEYLVTKYIN-*EFICI--TYLLFIN 325
           L K +FIF+I++++  YI+   ++C+   Y LFI+
Sbjct: 25  LFKCSFIFLIQFVIFTYIHIFSYLCVLFNYFLFID 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,596,544
Number of Sequences: 27780
Number of extensions: 288554
Number of successful extensions: 557
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)