Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q87GC2 Cluster: Putative transposase; n=4; Vibrio|Rep: ...    36   1.2  
UniRef50_Q9BVC5 Cluster: Ashwin; n=14; Amniota|Rep: Ashwin - Hom...    36   1.2  
UniRef50_A0C5H3 Cluster: Chromosome undetermined scaffold_15, wh...    34   2.8  
UniRef50_Q170Y5 Cluster: Putative uncharacterized protein; n=1; ...    34   3.7  
UniRef50_Q96UR3 Cluster: Cut1 protein; n=1; Schizosaccharomyces ...    34   3.7  
UniRef50_Q91FA5 Cluster: 420R; n=1; Invertebrate iridescent viru...    33   6.5  
UniRef50_A7QIW0 Cluster: Chromosome chr2 scaffold_105, whole gen...    33   6.5  
UniRef50_A5BNM1 Cluster: Putative uncharacterized protein; n=1; ...    33   6.5  

>UniRef50_Q87GC2 Cluster: Putative transposase; n=4; Vibrio|Rep:
           Putative transposase - Vibrio parahaemolyticus
          Length = 624

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 16/71 (22%), Positives = 35/71 (49%)
 Frame = +3

Query: 441 FIIRSHETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQINFRRK 620
           F +   E D+  +CN+  L+ EY + +++I+   + E +  KK +K      K++  R +
Sbjct: 156 FTLLETEIDRHNECNDTQLSFEYESFRKRIVKKTDYERLLIKKGKKAADTYYKKVGQRPE 215

Query: 621 QGSTIRYINED 653
               ++ +  D
Sbjct: 216 TTRVLQRVEAD 226


>UniRef50_Q9BVC5 Cluster: Ashwin; n=14; Amniota|Rep: Ashwin - Homo
           sapiens (Human)
          Length = 232

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 23/105 (21%), Positives = 54/105 (51%)
 Frame = +2

Query: 131 NVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLRIDGIEKMREMTYWTYFINTAFRTDKE 310
           +VG       E+LLHPELLS E L   +EQ+++ ++   ++ + +    ++  A    + 
Sbjct: 4   DVGGRSCTDSELLLHPELLSQEFLLLTLEQKNIAVETDVRVNKDSLTDLYVQHAIPLPQR 63

Query: 311 NTGILEEVKY*IELVISVRSHHDL*IKSKKLDTLRLSESNPLLIY 445
           +   L + ++  +++   R  H++  ++K+  T+      PL+++
Sbjct: 64  D---LPKNRW-GKMMEKKREQHEIKNETKRSSTVDGLRKRPLIVF 104


>UniRef50_A0C5H3 Cluster: Chromosome undetermined scaffold_15, whole
           genome shotgun sequence; n=3; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_15,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 384

 Score = 34.3 bits (75), Expect = 2.8
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = +1

Query: 250 NARDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVE 420
           N  DD  DL  QY     +RK  ++ +  + NR   +  E  R+L KI+ETR   +E
Sbjct: 25  NELDDDKDLIKQYNTAKRERKTIEAHKQLLDNRVALLKQEEIRTLKKIEETRKKALE 81


>UniRef50_Q170Y5 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 163

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 167 LLHPELLSNEQLTHIIEQRHLRIDGIEK 250
           +LHP LLS +QL  I  QRH+ I  +E+
Sbjct: 3   ILHPHLLSKQQLLDIFRQRHISIPRLEE 30


>UniRef50_Q96UR3 Cluster: Cut1 protein; n=1; Schizosaccharomyces
           japonicus|Rep: Cut1 protein - Schizosaccharomyces
           japonicus (Fission yeast)
          Length = 509

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = +1

Query: 256 RDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHT 411
           R   L +  QYC+   +R ++DS R  ILN    +S + +RS   + ET +T
Sbjct: 141 RKQSLHMASQYCIDDAKRLFKDSLRKNILNFYNTVSSKIARSKIMLYETEYT 192


>UniRef50_Q91FA5 Cluster: 420R; n=1; Invertebrate iridescent virus
           6|Rep: 420R - Chilo iridescent virus (CIV) (Insect
           iridescent virus type 6)
          Length = 447

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
 Frame = +3

Query: 444 IIRSHETDKARKCNNKVLTHEYNNHKRKII--NDPNSEPIQ---AKKERKVITWALKQIN 608
           I    +TDK +    + +T E  N K+ I+  N  N+E I+      E     +A  Q+N
Sbjct: 90  IYEIEQTDKKQIKQKRWITLEMRNFKKAILRLNTKNAEVIRDYYLNLEEACFDYAEYQVN 149

Query: 609 FRRKQGSTIRYINED 653
           + RK+    R INED
Sbjct: 150 WLRKKSDLERSINED 164


>UniRef50_A7QIW0 Cluster: Chromosome chr2 scaffold_105, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr2 scaffold_105, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 572

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = -2

Query: 148 HCFSDVKEEDLITCNI 101
           HCFSD+K+++L+TC+I
Sbjct: 179 HCFSDIKDQELLTCSI 194


>UniRef50_A5BNM1 Cluster: Putative uncharacterized protein; n=1; Vitis
            vinifera|Rep: Putative uncharacterized protein - Vitis
            vinifera (Grape)
          Length = 1220

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 10/16 (62%), Positives = 16/16 (100%)
 Frame = -2

Query: 148  HCFSDVKEEDLITCNI 101
            HCFSD+K+++L+TC+I
Sbjct: 1137 HCFSDIKDQELLTCSI 1152


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,100,977
Number of Sequences: 1657284
Number of extensions: 12140384
Number of successful extensions: 33756
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 32330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33736
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)