Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    29   0.63 
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    27   3.4  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    26   4.4  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    26   4.4  

>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
 Frame = +2

Query: 59  IMRRSYKTSNNLSFNVARN*IFLFNVGKTMAVPHEM--LLHPELLSNEQLTHIIEQRHLR 232
           I  R +K     SF + R+ I++  +G  + +P  +    HP+    ++L H  E RHL 
Sbjct: 206 IFGRIFKFIQQRSFYL-RSLIYIIPLGVLLLIPVFIGRFYHPQPPYRDELGHEYE-RHLH 263

Query: 233 IDGIEKMREMTYW 271
           + G++ M    +W
Sbjct: 264 VGGVDLMWMAIWW 276


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 9/36 (25%), Positives = 23/36 (63%)
 Frame = +3

Query: 57  ILCVGAIKLQIISVSMLHVIKSSSLTSEKQWLFLTK 164
           +  + +  LQII ++ L ++KS +L  ++ + F+++
Sbjct: 251 VFAISSSSLQIIDINTLSLVKSINLKDDESFSFISR 286


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
 Frame = +1

Query: 301 GQRKYRDSGRGKILNRTRHISP--EPSRSLNKIK--ETRHT 411
           G   +++ G GK+  R  H+SP  E ++SL   +  E++HT
Sbjct: 88  GSYGFKEFGLGKLFIRAMHLSPTSEDAKSLKNWRGSESKHT 128


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
 Frame = +3

Query: 480 CNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWA--LKQINFRRKQGSTIRYINED 653
           C NK L  E+ N+KR    DP S       E  +I +A   K I     Q +    INED
Sbjct: 155 CKNKKLLREHMNNKRHFRLDPKSSEYD---EFYIINYASVTKSITISHSQFA----INED 207

Query: 654 VSK 662
           +++
Sbjct: 208 INE 210


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,102
Number of Sequences: 5004
Number of extensions: 55363
Number of successful extensions: 163
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)