Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0489 - 24196037-24196105,24196199-24196279,24196358-241964...    31   0.86 
09_04_0739 - 19833462-19834456,19835272-19835333,19835846-198359...    31   1.1  
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680...    30   2.0  
08_01_0136 - 1077800-1077811,1077929-1078046,1079410-1079549,107...    28   6.0  

>11_06_0489 -
           24196037-24196105,24196199-24196279,24196358-24196438,
           24196513-24196614,24196693-24196782,24196865-24196945,
           24197021-24197122,24197198-24197287,24197368-24197448,
           24197524-24197622,24197720-24198055,24198142-24198228,
           24198318-24198413,24198499-24198732,24198792-24199036,
           24199119-24199383
          Length = 712

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 355 HISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTK 492
           HI+ + S   + +K TR   V+ I PP     G  ++  LEN ++K
Sbjct: 659 HITAKQSSIKSSVKRTRTNCVDSILPPDKAKQGPQRKGVLENTSSK 704


>09_04_0739 -
           19833462-19834456,19835272-19835333,19835846-19835937,
           19836271-19836540,19836795-19836913,19836947-19837778
          Length = 789

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
 Frame = +1

Query: 301 GQRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHT--TVERIKPPPDLLSGHMKRIKL 474
           G +  R S  GK+  + +  S      L K  E R T  T+ R KPP D    H    KL
Sbjct: 278 GPKALRRSWEGKVDTKGKTNSDSKMTKLEKKPENRGTMATIPRRKPPVDEKVQHKDDSKL 337

Query: 475 ENVTTK 492
           +N   K
Sbjct: 338 QNPAKK 343


>01_05_0600 +
           23566223-23566355,23567752-23567855,23567958-23568053,
           23568134-23568253,23568543-23568710,23568921-23569012,
           23569739-23569857,23570547-23570670,23570801-23570924,
           23571291-23571359,23571470-23571561,23571645-23571722,
           23571927-23571994,23572073-23572209
          Length = 507

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +3

Query: 444 IIRSHETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQIN 608
           ++ S ET  +  C  +V TH ++ H   I N+ + E   +  + ++  W L+  N
Sbjct: 207 VVTSQETSLSASCR-RVFTHAHDYHINSISNNSDGETFISADDLRINLWNLEISN 260


>08_01_0136 -
           1077800-1077811,1077929-1078046,1079410-1079549,
           1079627-1080313
          Length = 318

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = +1

Query: 304 QRKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPP 435
           +RK R  GRG +  RT+++S   SR L K +E     V  ++ P
Sbjct: 8   RRKGRRGGRGNVKRRTKYLS--LSRFLIKKEEEEEVVVVAVRSP 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,263,954
Number of Sequences: 37544
Number of extensions: 311212
Number of successful extensions: 699
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)