Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0283
(686 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_2509| Best HMM Match : Chordopox_A13L (HMM E-Value=3.6) 30 1.5
SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6) 29 2.7
SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8) 29 3.5
SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89) 28 6.2
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08) 28 8.1
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048) 28 8.1
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 328 RGKILNRTRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMN 507
R +++ RT RS N I E++++ +++ L+GH+K+ N + H +
Sbjct: 114 RREVVKRT--FERRKQRSNNNIIESKNSCLQQRNETAVRLNGHVKQSSTNNSQGRAEHNS 171
Query: 508 IIIIKGKSSMILTLSLF 558
+ S+I+ SLF
Sbjct: 172 RTTLHRPKSLIVLTSLF 188
>SB_2509| Best HMM Match : Chordopox_A13L (HMM E-Value=3.6)
Length = 375
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/49 (30%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Frame = +3
Query: 3 ARGGMEFKIRYFGRYR*IILCVGAIKL-QIISVSMLHVIKSSSLTSEKQ 146
A G +++K+R+FG++R ++ I L +I +++ V K+ S T+ K+
Sbjct: 156 AGGDVKYKLRHFGKFRVLLALTTIISLICVIFIALYAVEKTKSQTTPKK 204
>SB_49796| Best HMM Match : DUF293 (HMM E-Value=7.6)
Length = 542
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = +3
Query: 453 SHETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGST 632
S+E KARK + ++ + K +ND + + K R+ W L+ I K G T
Sbjct: 421 SYEAYKARK-QLSAIDWNFHQGREKAVNDKGEQMVSRKYNRRTKEWNLRII----KVGKT 475
Query: 633 IRYI 644
YI
Sbjct: 476 YDYI 479
>SB_8256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 624
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 319 DSGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIK 429
D GRG N SP+P R+ +++ + T E K
Sbjct: 37 DRGRGTARNNYSRYSPQPGRTTSRVHHSNQKTTEASK 73
>SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)
Length = 207
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +1
Query: 349 TRHISPEPSRSLNKIKETRHTTVERIKPPPDLLSGHMKRIKL 474
++H P P RS I RH++ PPP + H R+ L
Sbjct: 29 SKHTPPSPPRSAVFITIARHSSKHTPPPPPRSVVFHYHRVTL 70
>SB_20662| Best HMM Match : bZIP_1 (HMM E-Value=0.89)
Length = 589
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 510 NNHKRKIINDPNSEPIQAKKERKVITWALKQINFRR 617
N H R ++ E I+ KKE ++ A +Q+ RR
Sbjct: 127 NEHLRSLLKKSEDEAIEIKKENSLLRRACEQLRDRR 162
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 510 NNHKRKIINDPNSEPIQAKKERKVITWALKQINFRR 617
N H R ++ E I+ KKE ++ A +Q+ RR
Sbjct: 3233 NEHLRSLLKKSEDEAIEIKKENSLLRRACEQLRDRR 3268
>SB_31206| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 196
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +3
Query: 456 HETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGSTI 635
+E KARK + ++ + K +ND + + K R+ W L+ I K G T
Sbjct: 76 YEAYKARK-QLSAIDWNFHQGREKAVNDKGEQMVSRKYNRRTKKWNLRII----KVGKTY 130
Query: 636 RYI 644
YI
Sbjct: 131 DYI 133
>SB_14553| Best HMM Match : adh_short (HMM E-Value=4.2e-08)
Length = 319
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = -2
Query: 340 IFYLFQNPGIFFV---RTERSIDEISPISHLSHF 248
I L N G+ F+ RTE + I ++HLSHF
Sbjct: 117 IHILINNAGVGFIPFRRTEDGFEMIFAVNHLSHF 150
>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
Length = 1952
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 337 ILNRTRHISPEPSRSLNKIKET-RHTTVERIKPPPDLLSGHMKRIKLENVTT 489
++N T ISP P+R+ + + ET T I P P+ + M N TT
Sbjct: 236 VVNTTTSISPSPNRTTSSMYETITVNTTTSISPSPNETTSSMYVTIAVNSTT 287
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,327,468
Number of Sequences: 59808
Number of extensions: 382288
Number of successful extensions: 1048
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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