BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0283
(686 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein p... 24 5.2
AJ459779-1|CAD30839.1| 405|Anopheles gambiae clip-domain serine... 23 6.8
>AB090822-1|BAC57919.1| 468|Anopheles gambiae gag-like protein
protein.
Length = 468
Score = 23.8 bits (49), Expect = 5.2
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 391 IKETRHTTVERIKPPPDLLSGHMKRIKLENVTTKCSHMNIIIIKGKS 531
+KE HT +E+++ L GH+ R + + +H N+ I G S
Sbjct: 393 VKEAPHTPIEKLRCYRCLERGHVSR----DCHSPVNHSNVCIRCGTS 435
>AJ459779-1|CAD30839.1| 405|Anopheles gambiae clip-domain serine
protease protein.
Length = 405
Score = 23.4 bits (48), Expect = 6.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 202 NPHNRTE-TFEN*WDRKNARDDLLDLFHQYCVPY 300
N H + +EN D K+ DD++DL Q +P+
Sbjct: 205 NIHTNPDCVYEN--DLKDCSDDMIDLVPQAVIPH 236
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 663,139
Number of Sequences: 2352
Number of extensions: 12746
Number of successful extensions: 14
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69413730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -