Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-lik...    29   4.1  
U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>Z68751-8|CAA92978.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 519  KRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGSTIRYINED 653
            K+K  ++ + +P++  +E ++I    +  + RRK   T R+ NED
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPTRRFSNED 1467


>Z68341-5|CAA92768.1| 1474|Caenorhabditis elegans Hypothetical protein
            F01G4.1 protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 519  KRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGSTIRYINED 653
            K+K  ++ + +P++  +E ++I    +  + RRK   T R+ NED
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPTRRFSNED 1467


>AF230280-1|AAG16655.1| 1474|Caenorhabditis elegans SWI2/SNF2-like
            protein protein.
          Length = 1474

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 519  KRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGSTIRYINED 653
            K+K  ++ + +P++  +E ++I    +  + RRK   T R+ NED
Sbjct: 1423 KKKKESEDSEDPMEEDEEEEIIGQKKEPASSRRKSRPTRRFSNED 1467


>U97014-3|AAB52427.3|  856|Caenorhabditis elegans Hypothetical
           protein T05E8.3 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/54 (38%), Positives = 24/54 (44%)
 Frame = +3

Query: 459 ETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQINFRRK 620
           E+D      NK L  EYN   RK  ND N    Q  K   +I   LKQI   +K
Sbjct: 678 ESDARYGKANKSLEREYNQTIRKFCND-NMINEQHLKTASMIEEQLKQIAIEQK 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,892,410
Number of Sequences: 27780
Number of extensions: 305657
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 857
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)