Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   3.6  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   6.3  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   8.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   8.3  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   8.3  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 260 MTYWTYFINTAFRTDKEN 313
           +TYW +    +F TDK N
Sbjct: 77  LTYWAFGFAMSFGTDKLN 94


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 215 EQRHLRIDGIEKMREMTYWTYFINT 289
           E++  +  G  K+R + +WT F  T
Sbjct: 210 EKKIPKSSGWRKLRNIVHWTPFFQT 234


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = -2

Query: 169 KHFVRNSHCFSDVKEEDLITCNIETE 92
           K  +RN+HC ++ + +++   N + +
Sbjct: 406 KELIRNTHCVNNNQNDNIQNTNNQND 431


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 119 IFLFNVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLRIDGI 244
           I L N  KT+AVP   +L    L N +   +IE+     D I
Sbjct: 345 IMLLNE-KTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 119 IFLFNVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLRIDGI 244
           I L N  KT+AVP   +L    L N +   +IE+     D I
Sbjct: 345 IMLLNE-KTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 119 IFLFNVGKTMAVPHEMLLHPELLSNEQLTHIIEQRHLRIDGI 244
           I L N  KT+AVP   +L    L N +   +IE+     D I
Sbjct: 345 IMLLNE-KTLAVPAPPVLPENHLKNAKYLDVIERNSGATDKI 385


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 307 RKYRDSGRGKILNRTRHISPEPSRSLNKIKETRHTTVER 423
           R++RDS   ++ NR+  +  E S + N    +  +  E+
Sbjct: 729 RQHRDSLSPRVENRSAIVHSEASANANSSTSSEESREEK 767


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,193
Number of Sequences: 438
Number of extensions: 3966
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)