Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0283
         (686 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit...    29   2.2  
At2g34300.1 68415.m04196 dehydration-responsive protein-related ...    29   2.9  
At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing pro...    28   5.0  
At3g42870.1 68416.m04493 hypothetical protein                          28   6.7  
At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containi...    28   6.7  
At1g10420.1 68414.m01174 hypothetical protein                          28   6.7  
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    27   8.8  

>At1g60900.1 68414.m06856 U2 snRNP auxiliary factor large subunit,
           putative similar to U2 snRNP auxiliary factor, large
           subunit GB:CAA77136 from [Nicotiana plumbaginifolia]
          Length = 589

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = +1

Query: 208 HNRTETFEN*WDRKNARDDLLDLFHQYCVPYGQRKYRDSGRGKILNRTRHISPEPSRSLN 387
           H+R    +   +R   RDDL D  H+      +R+ RD  R ++ +R R  S   SRS  
Sbjct: 103 HHRDRHRDRSRERSEKRDDLDDDHHRRSRDRDRRRSRDRDR-EVRHRRRSRSRSRSRSER 161

Query: 388 KIK-ETRHTTVER 423
           + + E RH +  R
Sbjct: 162 RSRSEHRHKSEHR 174


>At2g34300.1 68415.m04196 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 423 NQTPS*FIIRSHETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERK 578
           ++ P  F    +E ++A   NN+V T   N+ +   +N+ + E  +A +ERK
Sbjct: 70  DRDPKNFSDEKNEENEAATENNQVKTDSENSAEGNQVNESSGEKTEAGEERK 121


>At5g24340.1 68418.m02868 3'-5' exonuclease domain-containing
           protein contains Pfam profile PF01612: 3'-5' exonuclease
          Length = 505

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 158 HEMLLHPELLSNEQLTHIIEQRHLRIDGIEKMREMT 265
           H++     LL NEQL  +IE   L+I G + M   T
Sbjct: 402 HQIYRVKSLLKNEQLLEVIETFQLKISGNQLMSRCT 437


>At3g42870.1 68416.m04493 hypothetical protein 
          Length = 312

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 242 IEKMREMTYWT-YFINTAFRTDKENTGILE 328
           I  + E+ YW  YFI+ A  TD++   +LE
Sbjct: 162 INALEELVYWRKYFIDIAASTDEDKVQLLE 191


>At1g76630.1 68414.m08916 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile: PF00515 TPR Domain (5
           copies)
          Length = 1064

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = +3

Query: 54  IILCVGAIKLQI--ISVSMLHVIKSSSLTSEKQWLFL 158
           ++LC   I LQ+  I+ S+ H  K+SSL+    +LFL
Sbjct: 838 LLLCASEISLQMGNIAESINHARKASSLSLPSSYLFL 874


>At1g10420.1 68414.m01174 hypothetical protein
          Length = 133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +1

Query: 322 SGRGKILNRTRHISPEPSRSLNKIKETRHTTVERIKP-PPDLLSGHMKRIKLENVTTK 492
           +G+G I +R+ H S E   S+NK K+T    + +++    DL S    +  LE    K
Sbjct: 61  AGKGAISHRS-HYSCESGSSINKQKQTEEDCIRKVQELQADLASSRETQEALERKVWK 117


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/73 (23%), Positives = 34/73 (46%)
 Frame = +3

Query: 459 ETDKARKCNNKVLTHEYNNHKRKIINDPNSEPIQAKKERKVITWALKQINFRRKQGSTIR 638
           + +K R   N  + HE    +RK+ ++    P   K  +KV+    K+    + +  ++R
Sbjct: 185 DQEKIRIGLNVDVIHEQQKKRRKMASEEIRRPKMVKSLKKVLQVMEKKQQKNKHEKESLR 244

Query: 639 YINEDVSKCSGDL 677
           +  +D   CS D+
Sbjct: 245 FCRKD---CSPDM 254


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,755,705
Number of Sequences: 28952
Number of extensions: 273985
Number of successful extensions: 718
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)