Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0282
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000E25AF8 Cluster: PREDICTED: similar to OTTHUMP000...    35   1.6  
UniRef50_A3LPY3 Cluster: Predicted RNA-binding protein Nob1p inv...    33   6.6  

>UniRef50_UPI0000E25AF8 Cluster: PREDICTED: similar to
           OTTHUMP00000028936; n=1; Pan troglodytes|Rep: PREDICTED:
           similar to OTTHUMP00000028936 - Pan troglodytes
          Length = 549

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = +3

Query: 111 GSESRPTEEIRREVQSIKLMYNFIVKIHSIKQMG 212
           G++S P EE+++  Q ++   NF+ KIH + Q G
Sbjct: 513 GAKSEPAEELKKRAQELEGKLNFLTKIHEMLQSG 546


>UniRef50_A3LPY3 Cluster: Predicted RNA-binding protein Nob1p
           involved in 26S proteasome assembly; n=7;
           Saccharomycetales|Rep: Predicted RNA-binding protein
           Nob1p involved in 26S proteasome assembly - Pichia
           stipitis (Yeast)
          Length = 481

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = -3

Query: 323 QIKRTFNYKYNC*AIFRLTIFPMTG 249
           QIKR  NY Y C A FRLT  P  G
Sbjct: 308 QIKRVRNYMYRCHACFRLTPIPKNG 332


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,788,818
Number of Sequences: 1657284
Number of extensions: 11296092
Number of successful extensions: 17991
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17987
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)