Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0282
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    28   1.5  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    27   2.6  
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    27   2.6  
SPAC2F7.05c |||translation initiation factor eIF5 |Schizosacchar...    26   5.9  
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom...    26   5.9  

>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 102 STAGSESRPTEEIRREVQSIKLMYNFIVKIHSIKQMGVYNPP 227
           ST    +  TE     +Q +K    F+V I S +QM V  PP
Sbjct: 54  STLEQRALSTELFNSYIQRLKANLAFVVSIASPRQMQVLTPP 95


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 412 HFNKIIRIHLF*YEYNNVNIIE 477
           HFN+I++I  F Y Y N  ++E
Sbjct: 275 HFNRILKIGRFPYMYENAKMME 296


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 171 YNFIVKIHSIKQMGVYNPPDFK 236
           Y+  V IHS  +  +Y  PDFK
Sbjct: 356 YSIAVSIHSTLRFSIYTHPDFK 377


>SPAC2F7.05c |||translation initiation factor eIF5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 395

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 501 EKVLLTSTLYNIDVVVFILK*VYSNDLI 418
           E+++  + L +IDVV  +L  +Y NDL+
Sbjct: 311 ERLMENTELVHIDVVPKVLLEIYQNDLV 338


>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 235 LKSGGLYTPICLME*IFTIKLYISLID 155
           L+ GG+Y  I L+E  FT +  + LID
Sbjct: 74  LRHGGIYNKIVLLEGFFTEEDELKLID 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,621,840
Number of Sequences: 5004
Number of extensions: 50145
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)