Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0282
         (694 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)           28   8.3  

>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +3

Query: 96   AESTAGSESRPTEEIRREVQSIKL--MYNFIVKIHSIKQMGVYNPPDFKRSSDAGHR 260
            A+STA S S+  ++   ++ +I     ++F+   H + +    N  DFK   DA HR
Sbjct: 1225 AKSTAPSASQAAKDFDEDIDAICSDDEFSFVDDDHKVCKRSEKNSADFKVKIDAAHR 1281


>SB_49453| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = -3

Query: 560 HLLLWRHLIDSLLTDAFYKL 501
           H++ W+HLI + LT AFY++
Sbjct: 664 HIIQWKHLIATDLTSAFYQI 683


>SB_9412| Best HMM Match : Peptidase_M1 (HMM E-Value=3.1e-07)
          Length = 1844

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/55 (30%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
 Frame = +2

Query: 371  NVKVTGKEANTSQNISIRSFEYTYFN-MNTTTSIL*RVEVRSTFSVYKKRPLKGS 532
            +V V GK ++ S ++S    E++  N ++T+TS+  R+  +   + +  RPL GS
Sbjct: 1227 SVDVDGKRSS-SPDVSSSVGEHSESNPVDTSTSVFDRISTKENVASHVSRPLGGS 1280


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,980,193
Number of Sequences: 59808
Number of extensions: 362397
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)