Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0281
         (727 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.62 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   1.9  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    23   2.5  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    23   3.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   7.7  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   7.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.7  

>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.0 bits (52), Expect = 0.62
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
 Frame = -2

Query: 363 TPRKAQRCSSKGVALRTPR*ASLSRLGASTPPPPPFANHDVRPAHTV-GPEGQI 205
           TPR     +S    +  PR    +  G   P  PP+   D+R   ++ GP+ Q+
Sbjct: 52  TPRWGCARASSATTMGGPRYGRAAAQGMPYPRFPPYDRMDIRDRRSLHGPQQQM 105


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = -1

Query: 415  TAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTL---SIPLPTRRVNTPAPAV 257
            TAATT+G+     ++ ++P+ S            TT     + LP   V  P P +
Sbjct: 1283 TAATTIGEGQPSKKVTVSPSASVPAKIASFDDTFTTTYKEDVTLPCLAVGLPPPVI 1338



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 522 INDIPGLRRPIWRSSPMTPP 463
           + D+PGLR+ +   + + PP
Sbjct: 65  VGDVPGLRQVLANGNLVFPP 84


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 285 GASTPPPPPFANHDVRPAHTVGPEGQI 205
           G   P  PP+   D+R A   GP+ Q+
Sbjct: 77  GMPYPRFPPYDRMDIRAAGYYGPQQQM 103


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 362 VNVDAPLPEPLSHGGSC 412
           +NVD   P P  +GG+C
Sbjct: 221 LNVDDCKPNPCQNGGTC 237


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 694 YKCITWECQN 665
           YKC+T +C+N
Sbjct: 871 YKCVTCKCEN 880


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -2

Query: 303 ASLSRLGASTPPPPPFANHDVRPAH 229
           A+ + L    PPPPP   H     H
Sbjct: 153 AAATSLPLHYPPPPPVYTHHYARYH 177


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 128 LGRLYPMICRRSKMSLRNKVTLYKTCIRPV 39
           LGR++   CR +  S  N ++  + C+  V
Sbjct: 304 LGRIFRAYCRENHASWVNHLSNIEDCLNYV 333


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = -3

Query: 581 HVTAXFPQAPPSPRYYSVCISTIYPVSG 498
           H+ +     PPSP+    C+S   P  G
Sbjct: 88  HLGSYAANCPPSPKDDEKCLSLERPSGG 115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,291
Number of Sequences: 336
Number of extensions: 4575
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)