Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0281
         (727 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M...    29   0.51 
SPBP23A10.14c |ell1||RNA polymerase II transcription elongation ...    29   0.89 
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    28   1.2  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   2.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.1  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   2.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   3.6  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    26   6.3  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   8.3  
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo...    25   8.3  
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|...    25   8.3  

>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -1

Query: 421 LQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLSIPLPTRRVNTPAPAVRQSRC 242
           L   + ++G+  +K  ID+    S  V+    +    TL+IP P + V     ++   R 
Sbjct: 223 LSNWSASLGEEVKKQGIDVWCFNSYLVVSAMSKVRRPTLTIPTPKKFVRAALSSIGLQRG 282

Query: 241 STSPY 227
            T+PY
Sbjct: 283 GTNPY 287


>SPBP23A10.14c |ell1||RNA polymerase II transcription elongation
           factor SpELL|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -1

Query: 340 LFKRG-RPPNTTLS-IPLPTRRVNTPAPAVRQSRCSTSP-YRGPRRS 209
           L K G RP NT+ S I L +   NTP+P +  S+ S SP Y G + S
Sbjct: 146 LKKNGLRPLNTSASRIGLSSSPTNTPSPNLPVSQPSASPHYSGDKNS 192


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
 Frame = -2

Query: 270 PPPPFANHDVR----PAHTVGPEGQIFRRHPR 187
           PPPPF +H++     P H  GPE +   + P+
Sbjct: 338 PPPPFKHHELEEHEGPEHHRGPEDKEHHKGPK 369


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -1

Query: 220 PRRSNI*ASPSTVG*HSAPTSRRYAIVPPSS*DVSTR 110
           P  SN  +  ST   H  P+S+R +++PP++ ++ +R
Sbjct: 314 PSGSNQASLRSTSTIHYTPSSKRISVIPPNTSNIGSR 350


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 1/82 (1%)
 Frame = -3

Query: 419 SDRSYHHGTVVPEVAHRH*PHEKHSGALQKGSPSEHHAEH-PSPD*ARQHPRPRRSPITM 243
           SD+  HH        H H  H  HS      SP+E    H PSP    Q   P  S    
Sbjct: 290 SDKDLHHEG---HHHHHHHHHHHHSHDDDPSSPAEKKQNHVPSPSEKIQDHVPSPSEKKQ 346

Query: 242 FDQPIPWAPKVKYLGVTLDSRM 177
              P P   K  +L +  D ++
Sbjct: 347 DRVPSPSNNKEDHLPLLSDEKL 368


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = -1

Query: 271 PAPAVRQSRCSTSPYRGPRRSNI*ASPSTVG*HSAPTSRRYAIVP 137
           P    +Q   ST+P R  R S++ ++ ++V   +AP +   A++P
Sbjct: 200 PVKKSKQKSASTAPPRTRRNSSVSSTSASVAASTAPKAASPAVLP 244


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 7/69 (10%)
 Frame = -2

Query: 303  ASLSRLGAST--PPPPPF-----ANHDVRPAHTVGPEGQIFRRHPRQ*DDIPPPHQDGTR 145
            A+ SR+ +S   PP  P+     A+  V PAHT  P G            +PPP Q   R
Sbjct: 967  AAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGS--------QIVPPPKQPANR 1018

Query: 144  SCRLHPRTS 118
               L P  S
Sbjct: 1019 VVPLPPTAS 1027


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 388 FRKWRIDINPTKSTAVLFKRGRPPNTTLSIPL 293
           F+ W+    P+ S  +L ++G PP + LS  L
Sbjct: 260 FQIWKAHNPPSSSKFILEQKGLPPESNLSSEL 291


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 362 PHEKHSGALQKGSPSEHHAEHPSPD 288
           PHEKH   L++ S  + H E  S D
Sbjct: 163 PHEKHFRPLRQRSSVDDHQEFESED 187


>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +3

Query: 21  YTCIGHDGAYASFVECHLISKGHFTSP 101
           Y  +G DG Y S  EC   S+  FT P
Sbjct: 156 YETLGEDGIYTSLDECK--SRAIFTDP 180


>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 449 TRVVDGGVIGEER-QMGLRRPGISLIYKL 532
           TRV DG ++GE+  ++    PG  L+ KL
Sbjct: 635 TRVYDGQIVGEDAPEISKENPGRRLLEKL 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,258,837
Number of Sequences: 5004
Number of extensions: 75248
Number of successful extensions: 237
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)