Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0281
(727 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 26 0.31
U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein. 23 2.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.2
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 23 2.9
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 23 2.9
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 23 2.9
AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding pr... 23 2.9
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein. 23 3.9
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 22 5.1
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr... 21 9.0
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 26.2 bits (55), Expect = 0.31
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 285 GASTPPPPPFANHD 244
G+ PPPPP NHD
Sbjct: 1855 GSPEPPPPPPRNHD 1868
>U15954-1|AAA67442.1| 53|Apis mellifera abaecin precursor protein.
Length = 53
Score = 23.4 bits (48), Expect = 2.2
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = -3
Query: 272 PRPRRSPITMFDQPIPWAPKVKY 204
P+P R P F P+ PK+K+
Sbjct: 27 PQPGRRPFPTFPGQGPFNPKIKW 49
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 439 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 302
A LH + W + +I++NP+ + V KR P+ ++
Sbjct: 825 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 870
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.2
Identities = 11/46 (23%), Positives = 21/46 (45%)
Frame = -1
Query: 439 ALLHRRLQTAATTMGQWFRKWRIDINPTKSTAVLFKRGRPPNTTLS 302
A LH + W + +I++NP+ + V KR P+ ++
Sbjct: 821 ATLHCEVHGDTPVTVTWLKGGKIELNPSTNYRVTVKREVTPDGVIA 866
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 525 YINDIPGLRRPIWRSSPM 472
Y N +P +RPIW + P+
Sbjct: 301 YSNGLPFPQRPIWSNFPI 318
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 23.0 bits (47), Expect = 2.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -2
Query: 525 YINDIPGLRRPIWRSSPM 472
Y N +P +RPIW + P+
Sbjct: 301 YSNGLPFPQRPIWSNFPI 318
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 23.0 bits (47), Expect = 2.9
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 646 RDYLSKPFRSDIESRERVPG 587
RDY S+PF + S R+PG
Sbjct: 98 RDYFSRPFEKRLHS--RLPG 115
>AB083010-1|BAC54131.1| 132|Apis mellifera fatty acid binding
protein protein.
Length = 132
Score = 23.0 bits (47), Expect = 2.9
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 210 DLRGPRYGLVEHRDW----RTAGAGVLTRLVGRGMLSVV 314
D G RY L ++ + G G++TR VG + VV
Sbjct: 3 DFLGKRYKLYSSENFDDFMKALGVGIMTRKVGSSVSPVV 41
>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
Length = 1598
Score = 22.6 bits (46), Expect = 3.9
Identities = 11/47 (23%), Positives = 19/47 (40%)
Frame = -3
Query: 398 GTVVPEVAHRH*PHEKHSGALQKGSPSEHHAEHPSPD*ARQHPRPRR 258
G + E RH + H LQ + +HH + +Q + R+
Sbjct: 131 GLIKQETLQRHHHLQNHHHHLQSTAVQDHHRPYQQQQQQQQRQQQRQ 177
Score = 22.6 bits (46), Expect = 3.9
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -1
Query: 274 TPAPAVRQSRCSTSPYRGPRRS 209
TP P + Q YRGP S
Sbjct: 1339 TPVPRLAQDSSEDESYRGPSAS 1360
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 22.2 bits (45), Expect = 5.1
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Frame = -3
Query: 578 VTAXFPQAPPSPRYYSVCISTIY-PVSGD 495
V + P PP P S C+ + Y P+ D
Sbjct: 175 VASMDPPEPPVPTVTSACVGSAYTPLKED 203
>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
protein.
Length = 1370
Score = 21.4 bits (43), Expect = 9.0
Identities = 11/40 (27%), Positives = 14/40 (35%)
Frame = -1
Query: 505 SPETHLALFADDTAIYYSCRKKALLHRRLQTAATTMGQWF 386
S H + A D YY + RRL T +F
Sbjct: 941 SDNAHKVVDASDVWCYYGGDARPAYRRRLNVNETVCSDYF 980
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 241,114
Number of Sequences: 438
Number of extensions: 6342
Number of successful extensions: 18
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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