Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0279
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.09c |||DNA-binding TFAR19-related protein|Schizosacchar...    54   3e-08
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    28   1.4  
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol...    26   4.4  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    26   5.8  
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    25   7.7  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.7  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.7  

>SPAC23C4.09c |||DNA-binding TFAR19-related
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 131

 Score = 53.6 bits (123), Expect = 3e-08
 Identities = 26/64 (40%), Positives = 39/64 (60%)
 Frame = +2

Query: 260 RPEKAAMIENMICRMAQMGQIQCKITEPDLIQILESFNQQMPKSQSTVKFDRRRAALDSD 439
           R ++A  +E ++ RMA+ GQI  KI+EP+LI++LE  + ++ K   T     RR   D D
Sbjct: 68  RKDRAEAVEELLLRMAKTGQISHKISEPELIELLEKISGEVSKRNETKIVINRRVQDDED 127

Query: 440 DEDL 451
           D DL
Sbjct: 128 DWDL 131


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +2

Query: 593 YLKGKSYFFKYSSYFLVYVV-GNFETW 670
           Y  GK+Y + + ++FLVYV+ G+   W
Sbjct: 532 YAVGKNYAYLFVNFFLVYVIAGSTSIW 558


>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 797

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 670 PGFKISNDINQKI 632
           PGF ISND+N KI
Sbjct: 496 PGFLISNDVNHKI 508


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 430 QCSSSSVKLNGALRFGHLLIKGFQNLY*IRFSYFTLNLTHL 308
           +C  S    N  L FGH  +K  ++LY +   Y    LT+L
Sbjct: 695 RCYYSIFLNNNILPFGHPFVKECRSLYNLACIYSKTRLTYL 735


>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +1

Query: 25  VNCDPEKTINCFKMDDPELD 84
           +N DPE    CF+ D  ELD
Sbjct: 106 LNLDPETAPKCFECDSIELD 125


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = -2

Query: 591  LMDMNNNLRWLIYIFKCVIYCNFNQKHEDIYN 496
            ++D+N+++R+ IY+F     C+  Q   D ++
Sbjct: 2946 VLDLNDSIRFEIYLFLASRLCSEKQHSSDTHS 2977


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 481 SCLNIIINILMFLVKVTINNTFKNVD*PS*IIIHV 585
           +CLN +INI   L+    N  F ++D  S +I H+
Sbjct: 682 ACLNYLINIKRLLLCPFSNRNFSSLDLYSNLIQHL 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,505,711
Number of Sequences: 5004
Number of extensions: 44827
Number of successful extensions: 103
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)