Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0279
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha ...    23   6.8  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   9.0  

>AF313909-1|AAL99382.1| 1024|Anopheles gambiae collagen IV alpha 1
            chain protein.
          Length = 1024

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = +2

Query: 143  EQCQSTTRKNASNGTS*THYIESSAKPRCPSQIEHNQMGRPEKAAM-IENMICRMAQ 310
            E  ++T     + G    HY E+       S  +H Q  RPE+  +   N++ R+++
Sbjct: 961  EDFRATPFIECNGGKGHCHYYETQTSFWLVSLEDHQQFQRPEQQTLKAGNLLSRVSR 1017


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = -2

Query: 579 NNNLRW---LIYIFKCVIYCNFNQKHEDIYN 496
           N   RW   L+Y+   ++ C+ ++++EDI N
Sbjct: 613 NKRDRWSFILLYVDDMLVACSEDREYEDIEN 643


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 616,481
Number of Sequences: 2352
Number of extensions: 11041
Number of successful extensions: 37
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)