Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0279
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical pr...    58   4e-09
U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signaloso...    31   0.77 

>Z79752-3|CAB02078.2|  130|Caenorhabditis elegans Hypothetical
           protein D2005.3 protein.
          Length = 130

 Score = 58.4 bits (135), Expect = 4e-09
 Identities = 35/98 (35%), Positives = 57/98 (58%)
 Frame = +2

Query: 152 QSTTRKNASNGTS*THYIESSAKPRCPSQIEHNQMGRPEKAAMIENMICRMAQMGQIQCK 331
           Q+  ++ A NG   +  ++ +A  R    + +  + +PEKA M+E  +  MA+ GQ+  K
Sbjct: 36  QAENQETAKNGMI-SQILDQAAMQR----LSNLAVAKPEKAQMVEAALINMARRGQLSGK 90

Query: 332 ITEPDLIQILESFNQQMPKSQSTVKFDRRRAALDSDDE 445
           +T+  L  ++E  + Q  K+ S VKFDRRR  LDSD+E
Sbjct: 91  MTDDGLKALMERVSAQTQKATS-VKFDRRRNELDSDEE 127


>U80814-5|AAB37991.1|  368|Caenorhabditis elegans Cop-9 signalosome
           subunit protein 5 protein.
          Length = 368

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = -1

Query: 649 DINQKIATVFKKVRLSLQIINGHE**FKMV 560
           DINQK++ V KK++L+ + ++GHE   K+V
Sbjct: 269 DINQKLSAVDKKLQLNDRSVDGHEALMKVV 298


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,800,933
Number of Sequences: 27780
Number of extensions: 251991
Number of successful extensions: 573
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)