Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0279
         (685 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29850.2 68414.m03649 double-stranded DNA-binding family prot...    52   4e-07
At1g29850.1 68414.m03648 double-stranded DNA-binding family prot...    52   4e-07
At1g12800.1 68414.m01486 S1 RNA-binding domain-containing protei...    29   2.2  
At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC ...    29   3.8  
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ...    27   8.8  

>At1g29850.2 68414.m03649 double-stranded DNA-binding family protein
           contains Pfam profile: PF01984 double-stranded
           DNA-binding domain
          Length = 130

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +2

Query: 260 RPEKAAMIENMICRMAQMGQIQCKITEPDLIQILESFNQQMPKSQSTVKFDRRRAALD 433
           +PEKA  +E++I R AQMGQI  K++E  LI +LE  N Q  K Q+ V + RRR   D
Sbjct: 73  KPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTK-QTKVTYQRRRGVDD 129


>At1g29850.1 68414.m03648 double-stranded DNA-binding family protein
           contains Pfam profile: PF01984 double-stranded
           DNA-binding domain
          Length = 129

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 28/58 (48%), Positives = 37/58 (63%)
 Frame = +2

Query: 260 RPEKAAMIENMICRMAQMGQIQCKITEPDLIQILESFNQQMPKSQSTVKFDRRRAALD 433
           +PEKA  +E++I R AQMGQI  K++E  LI +LE  N Q  K Q+ V + RRR   D
Sbjct: 72  KPEKARGVEDVILRAAQMGQIVEKVSEERLITLLEQINSQTTK-QTKVTYQRRRGVDD 128


>At1g12800.1 68414.m01486 S1 RNA-binding domain-containing protein
           contains Pfam domain, PF00575: S1 RNA binding domain
          Length = 767

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/60 (25%), Positives = 28/60 (46%)
 Frame = +2

Query: 233 SQIEHNQMGRPEKAAMIENMICRMAQMGQIQCKITEPDLIQILESFNQQMPKSQSTVKFD 412
           S+I +N + +PE    +EN+   +A  G ++    E + I      N +M   + T+  D
Sbjct: 286 SEIVNNSIQKPEARPELENIEKEVADSGVLESSEIENNSIPTEMQLNSEMSSEEKTINSD 345


>At5g04220.2 68418.m00411 C2 domain-containing protein (sytC) GC
           donor splice site at exon 3; similar to Ca2+-dependent
           lipid-binding protein (CLB1) GI:2789434 from
           [Lycopersicon esculentum]
          Length = 540

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 130 PPCAPVIELDVAV*FDLIPDHP 65
           PP  P++E  ++V  DL+PD P
Sbjct: 39  PPARPLVETSISVLLDLLPDIP 60


>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
           contains Pfam PF00096: Zinc finger, C2H2 type
          Length = 387

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 152 QSTTRKNASNGTS*THYIESSAKP 223
           Q   RK+ASNG   TH  +S AKP
Sbjct: 286 QDVYRKHASNGKGQTHKQQSRAKP 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,876,876
Number of Sequences: 28952
Number of extensions: 225763
Number of successful extensions: 416
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 415
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)