Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0277
         (687 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    23   2.3  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    23   3.1  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    23   3.1  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    22   4.1  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.2  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   7.2  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 265 DDYDVYVSPLSFSPNRDSDAV 327
           DDYD+Y   +SFS    S  +
Sbjct: 545 DDYDIYTRLVSFSDRLKSRGI 565


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 574 VYIILKKKPALCLL*R*NELMRRGLRNVKLKSIDIFYFFPYLLTGSLRGYSSSARI 407
           +Y  +K   A+C L   N L       +K    D FYF  Y+ + +L    S  RI
Sbjct: 21  IYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITSYTLLSVYSLFRI 76


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = -3

Query: 574 VYIILKKKPALCLL*R*NELMRRGLRNVKLKSIDIFYFFPYLLTGSLRGYSSSARI 407
           +Y  +K   A+C L   N L       +K    D FYF  Y+ + +L    S  RI
Sbjct: 21  IYTSMKPVYAICKLIGLNTLRIGRKGELKQHKSDYFYFSFYITSYTLLSVYSLFRI 76


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 100 HRQRLD*RQIDL*HNNCLRIWNQNMHLRFNIT*SQLS 210
           H  +LD  Q++L H+N L +  Q  H + N++  +LS
Sbjct: 294 HPSKLDVEQMNLLHSNDLNMHQQ--HHQQNMSHEELS 328


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 586 VGIIYYTSYVWHSVESVFISICHLFGPYVTDPL 684
           +GI  Y S +WH+   V       + P   DPL
Sbjct: 465 MGIQPYDSLLWHTWMPVMRICVSAWNPKDCDPL 497


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 576 KYGRRYHLLHELC 614
           ++ RR+HL+H  C
Sbjct: 255 RFRRRHHLVHHKC 267


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,271
Number of Sequences: 336
Number of extensions: 3362
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)