Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0277
         (687 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.6  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   4.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   8.3  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 395 SSPTYPGGTGIAP*ASS 445
           +SP+YPGG   +P  SS
Sbjct: 79  TSPSYPGGGSSSPSPSS 95


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 124 ASSLTFVYDLDFS 86
           A+SL FVY LDF+
Sbjct: 127 ATSLCFVYPLDFA 139


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -3

Query: 124 ASSLTFVYDLDFS 86
           A+SL FVY LDF+
Sbjct: 127 ATSLCFVYPLDFA 139


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 194 LNLSCLFLAGSNLIK 238
           L++SC F AGS +I+
Sbjct: 117 LHVSCSFSAGSTIIR 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,224
Number of Sequences: 438
Number of extensions: 3660
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)