Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0277
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61900.2 68414.m06984 expressed protein contains similarity t...    29   3.8  
At1g61900.1 68414.m06983 expressed protein contains similarity t...    29   3.8  
At1g76110.1 68414.m08838 high mobility group (HMG1/2) family pro...    28   5.0  

>At1g61900.2 68414.m06984 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 413

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +1

Query: 316 SDAVIDSTKHCSCYGQY**ILSN------RDRELTYLSGRNWNSPLGFQSISREKNKKCL 477
           S+++I +T H +C+  +  +L+N       D  LT + G+  +   G  +++R ++K CL
Sbjct: 76  SESLIQTTSH-NCWTVFAPLLANVMCCPQLDATLTIILGKA-SKETGLLALNRTQSKHCL 133

Query: 478 WT*ASHFVGHGASVHFNVI 534
                  VG GAS   N I
Sbjct: 134 SDLEQILVGKGASGQLNKI 152


>At1g61900.1 68414.m06983 expressed protein contains similarity to
           glutamic acid/alanine-rich protein GI:6707830 from
           [Trypanosoma congolense]
          Length = 433

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
 Frame = +1

Query: 316 SDAVIDSTKHCSCYGQY**ILSN------RDRELTYLSGRNWNSPLGFQSISREKNKKCL 477
           S+++I +T H +C+  +  +L+N       D  LT + G+  +   G  +++R ++K CL
Sbjct: 76  SESLIQTTSH-NCWTVFAPLLANVMCCPQLDATLTIILGKA-SKETGLLALNRTQSKHCL 133

Query: 478 WT*ASHFVGHGASVHFNVI 534
                  VG GAS   N I
Sbjct: 134 SDLEQILVGKGASGQLNKI 152


>At1g76110.1 68414.m08838 high mobility group (HMG1/2) family
           protein / ARID/BRIGHT DNA-binding domain-containing
           protein low similarity to high mobility group protein
           [Plasmodium falciparum] GI:790198; contains Pfam
           profiles PF00505: HMG (high mobility group) box,
           PF01388: ARID/BRIGHT DNA binding domain
          Length = 338

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 304 PNRDSDAVIDSTKHCSCYGQY**ILSNRDRELTYLSGRNWNS 429
           PNR       + KHC     Y     N++RE T L G +W++
Sbjct: 257 PNRSGYNFFFAEKHCKLKSLY----PNKEREFTKLIGESWSN 294


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,020,299
Number of Sequences: 28952
Number of extensions: 276224
Number of successful extensions: 448
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 448
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)