Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0276
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 30 0.36
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 28 1.1
SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces pombe... 27 2.6
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 26 4.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 4.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 26 4.5
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 26 5.9
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 5.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.9
SPCC4B3.18 |||phosphopantothenate-cysteine ligase|Schizosaccharo... 26 5.9
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 29.9 bits (64), Expect = 0.36
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -3
Query: 451 IYTQDAPKLCGVIRKTFKMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYG 293
I ++ PKL GV+ F R++ ++D+ + +G+ N+D T + G
Sbjct: 572 IRNEEEPKLKGVLGMKFMRDASNRQKALVQDEMQAFEDELAGVPNEDDTSQKG 624
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = -3
Query: 349 IISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFMTII 224
++ + SG+S D T E ++HS ++ + E K F+T++
Sbjct: 421 LLFDIGSGLSGSDYTYEQYINHSAVAFSFTEEIFEKNFVTVL 462
>SPBC17D1.03c |||exosome subunit Rrp43 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = +1
Query: 298 IPLLSLCLKSRSLAWI*YA--ICLQY 369
I L SLC+ + AW+ YA ICL Y
Sbjct: 131 INLQSLCIFEKKAAWVLYADIICLNY 156
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/44 (29%), Positives = 19/44 (43%)
Frame = +2
Query: 155 IGTLIKLPQYLYASLFWLVSFSKNYCHKAFEFFPLFPNG*NCRV 286
+ T +KLP + FW+ N C F LF +CR+
Sbjct: 41 VHTTLKLPTSTLSREFWMKDERTNNCSLCETEFTLFRRKHHCRI 84
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = -3
Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLT 305
+ K+ + +E +R+I+ L+ GI+ KD++
Sbjct: 1188 ENKKLKRTVESSNRVIADLQRGITEKDVS 1216
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -1
Query: 480 FISLQLVCYLSIHKTHQNFVELFAKLSKCRKEKENKLILKTNRVL 346
F+S +VC LS+ F+ A+L+ ++E E K++ K V+
Sbjct: 527 FLSKWIVCALSLSIAVNVFLLNAARLNSIKEEPEKKVVEKVVEVV 571
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 25.8 bits (54), Expect = 5.9
Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = -2
Query: 314 RLNKGIWCI---TLDNFNHLERAEKIQTLYDNNFLKMKRARTTKHTNIEEALLKSLSICL 144
RL + IW I TLD F+ + E+I L N K I EAL+K
Sbjct: 648 RLFQDIWPILSRTLDTFSDVLICERISKLLKNFIYTFKEKAIVTLPVITEALIKGFEKTQ 707
Query: 143 Y 141
Y
Sbjct: 708 Y 708
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = -3
Query: 412 RKTFKMSQRKRKQINIEDKSRIISKLESGISNKDLTKE 299
+K K++++K+K+ +DK K +SG S+K+ K+
Sbjct: 190 KKLEKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKK 227
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -2
Query: 266 LERAEKIQTLYDNNFLKMKRARTTKHTNIEEALLKSL 156
L+ +K +Y+N+F+K T+ T+ + +LK+L
Sbjct: 1004 LKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTL 1040
>SPCC4B3.18 |||phosphopantothenate-cysteine
ligase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 5.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -1
Query: 63 VFFLYRIYSEIPFHARY 13
V FLYR YS +PF RY
Sbjct: 83 VIFLYRNYSLMPFTRRY 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,896,275
Number of Sequences: 5004
Number of extensions: 60482
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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