Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    31   1.1  
10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    28   6.1  
05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635     28   6.1  
02_01_0521 + 3768072-3768239,3768280-3768337,3769197-3769659,376...    28   6.1  

>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
 Frame = -3

Query: 436 APKLCGVIRKTFKM-SQRKRKQINIEDK-SRIISKLESGISNKDLTKEYGVSHSTISTIW 263
           A +  G I+  F++ S RK++Q  ++++ + IIS  E G ++  + ++  +S       W
Sbjct: 614 AVQAAGRIQTAFRIFSFRKKQQAGLQNRGNHIISIREVGAASHGMLEKAALSIQKNFRCW 673

Query: 262 KERKKF 245
           K+RK+F
Sbjct: 674 KKRKEF 679


>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 207 SFHFQKIIVIKRLNFFRSFQMVEIVEC 287
           S+H  +II+  R++FF    ++E VEC
Sbjct: 696 SYHHCEIIICMRIHFFMHTLLMEYVEC 722


>05_04_0120 - 18175292-18176206,18177315-18177785,18178562-18179635
          Length = 819

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = -2

Query: 182 IEEALLKSLSICLYLHDIH-*TSTVVTTVYEQL*QILTVRMFFFYIV----FTPRFRFML 18
           +  A LK+ ++CL+L D+H   S++V+T+     + L+  +   Y V     +P F+ M 
Sbjct: 529 VTPAQLKNFALCLHLQDVHTRISSIVSTLPNVTSEKLSKSLEAIYTVACDSVSPLFKEMF 588

Query: 17  DIL-SC 3
           D L SC
Sbjct: 589 DRLGSC 594


>02_01_0521 +
           3768072-3768239,3768280-3768337,3769197-3769659,
           3769736-3769990,3770763-3770934,3772260-3772910,
           3773659-3774045,3774123-3774155,3774239-3774307,
           3774388-3774463,3775135-3775223,3775442-3775615,
           3775693-3775821
          Length = 907

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 142 TCTIYIKHQRLLRLYMSSYNRF*LYVCFFFISY 44
           +C++ + H+R+ + Y   YNR    +C +F+ Y
Sbjct: 166 SCSLKVNHKRVAKAYFIGYNR---SLCKYFVCY 195


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,249,583
Number of Sequences: 37544
Number of extensions: 299758
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)