Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_32811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 378

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = -1

Query: 225 FFENETSQNNEAYKY*GSFIKVPIDLFVLARYTLNINGCYDCI*AVITDFDCTYVFFLYR 46
           F EN        YK   S  K  +DL   AR+  + +GC + I  +  DF C  + +LY 
Sbjct: 84  FRENHLEILTRFYKAFESVHKYVVDLNSKARFFPSPSGCQENISLIFVDFQCESL-YLYG 142

Query: 45  I 43
           +
Sbjct: 143 V 143


>SB_32582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1151

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
 Frame = -3

Query: 430 KLCGVIRKTFKMSQRKRKQINIEDKSRII-SKLESGISNKDLTKEYG 293
           ++C ++RKT K+   KR+   IE++  +  SK+ES   ++  T+++G
Sbjct: 798 QMCEMLRKTDKLRDYKRRIREIEEREILAKSKIESSRPDES-TEDFG 843


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,389,705
Number of Sequences: 59808
Number of extensions: 398262
Number of successful extensions: 983
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)