Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposa...    28   0.24 
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p...    25   3.0  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   6.9  

>AF378002-1|AAL16724.1|  336|Anopheles gambiae putative transposase
           protein.
          Length = 336

 Score = 28.3 bits (60), Expect = 0.24
 Identities = 13/51 (25%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
 Frame = -3

Query: 415 IRKTFKMSQRKRKQINIED--KSRIISKLESG--ISNKDLTKEYGVSHSTI 275
           I  T +  Q  R+   ++   +S+I+  ++    +S++DL +++G +HST+
Sbjct: 45  ILTTIRKPQANRRSGTVDQNLRSKILKTIKGNPNLSDRDLARKFGATHSTV 95


>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
           protein.
          Length = 1077

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
 Frame = -3

Query: 430 KLCGVIRKTFKMSQRKRK-----QINIEDKSRIISKLESGISNKDLTKEYGVSHSTIST 269
           ++CG    TF++ +R+R+     ++NIED + +  K    +  +    E   + +T +T
Sbjct: 360 RVCGENISTFQLEERRRRRTVIEKLNIEDGTSLTDKDAINVHIRSFFSELYTTDNTDNT 418


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -1

Query: 177 GSFIKVPIDLFVLARYTLNINGCY 106
           GSF +VP   FV+AR     N  Y
Sbjct: 161 GSFDEVPNSAFVVARTAFRDNSSY 184


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 704,396
Number of Sequences: 2352
Number of extensions: 13334
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 70250040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)