Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0276
(693 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK056604-1|BAB71230.1| 521|Homo sapiens protein ( Homo sapiens ... 51 3e-06
CR533559-1|CAG38590.1| 521|Homo sapiens TIGD6 protein. 51 5e-06
BC117249-1|AAI17250.1| 521|Homo sapiens tigger transposable ele... 51 5e-06
AC104785-1|AAY40951.1| 525|Homo sapiens unknown protein. 46 2e-04
BC037869-1|AAH37869.1| 512|Homo sapiens tigger transposable ele... 44 5e-04
BC109202-1|AAI09203.1| 524|Homo sapiens jerky homolog-like (mou... 43 0.001
BC069632-1|AAH69632.1| 549|Homo sapiens tigger transposable ele... 41 0.004
BC069623-1|AAH69623.1| 549|Homo sapiens tigger transposable ele... 41 0.004
AF251050-1|AAK34940.1| 511|Homo sapiens jerky protein. 41 0.004
AK057033-1|BAB71351.1| 246|Homo sapiens protein ( Homo sapiens ... 38 0.026
BC043351-1|AAH43351.1| 568|Homo sapiens JRK protein protein. 37 0.059
AK127631-1|BAC87064.1| 556|Homo sapiens protein ( Homo sapiens ... 37 0.059
X55039-1|CAA38879.1| 599|Homo sapiens centromere autoantigen B ... 35 0.32
BC053847-1|AAH53847.1| 599|Homo sapiens centromere protein B, 8... 35 0.32
AL109804-11|CAC17547.1| 599|Homo sapiens centromere protein B, ... 35 0.32
AF002713-1|AAB70165.1| 125|Homo sapiens centromere protein B pr... 35 0.32
AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens ... 32 1.7
BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonse... 32 2.2
BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonse... 32 2.2
AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein. 32 2.2
AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonse... 32 2.2
AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonse... 32 2.2
AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein. 32 2.2
AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense t... 32 2.2
AF146760-1|AAF67469.1| 517|Homo sapiens septin 10 protein. 32 2.2
AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein. 32 2.2
Z75330-1|CAA99731.1| 1258|Homo sapiens nuclear protein SA-1 prot... 30 6.8
U49973-1|AAB61714.1| 454|Homo sapiens putative transposase prot... 30 6.8
BC064699-1|AAH64699.1| 1221|Homo sapiens STAG1 protein protein. 30 6.8
AK223583-1|BAD97303.1| 593|Homo sapiens tigger transposable ele... 30 6.8
AB210023-1|BAE06105.1| 1275|Homo sapiens STAG1 variant protein p... 30 6.8
BC063500-1|AAH63500.2| 591|Homo sapiens tigger transposable ele... 30 9.0
BC035143-1|AAH35143.2| 591|Homo sapiens tigger transposable ele... 30 9.0
AK056329-1|BAB71153.1| 591|Homo sapiens protein ( Homo sapiens ... 30 9.0
AC092165-4|AAY24104.1| 591|Homo sapiens unknown protein. 30 9.0
>AK056604-1|BAB71230.1| 521|Homo sapiens protein ( Homo sapiens
cDNA FLJ32042 fis, clone NTONG2000878, weakly similar to
MAJOR CENTROMERE AUTOANTIGEN B. ).
Length = 521
Score = 51.2 bits (117), Expect = 3e-06
Identities = 19/50 (38%), Positives = 37/50 (74%)
Frame = -3
Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFK 242
++KR+Q ++E+K +++ ++SG D+ KE+G++ ST+ST K+R KF+
Sbjct: 6 KKKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTKFE 55
>CR533559-1|CAG38590.1| 521|Homo sapiens TIGD6 protein.
Length = 521
Score = 50.8 bits (116), Expect = 5e-06
Identities = 19/49 (38%), Positives = 36/49 (73%)
Frame = -3
Query: 388 RKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFK 242
+KR+Q ++E+K +++ ++SG D+ KE+G++ ST+ST K+R KF+
Sbjct: 7 KKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTKFE 55
>BC117249-1|AAI17250.1| 521|Homo sapiens tigger transposable
element derived 6 protein.
Length = 521
Score = 50.8 bits (116), Expect = 5e-06
Identities = 19/49 (38%), Positives = 36/49 (73%)
Frame = -3
Query: 388 RKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFK 242
+KR+Q ++E+K +++ ++SG D+ KE+G++ ST+ST K+R KF+
Sbjct: 7 KKRRQFSLEEKMKVVGAVDSGKRKGDVAKEFGITPSTLSTFLKDRTKFE 55
>AC104785-1|AAY40951.1| 525|Homo sapiens unknown protein.
Length = 525
Score = 45.6 bits (103), Expect = 2e-04
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = -3
Query: 397 MSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKK 248
+ +RKR + I+DK II KLE GIS K L+ YG+ ST+ I K +++
Sbjct: 2 LGKRKRVVLTIKDKLDIIKKLEEGISFKKLSVVYGIGESTVRDIKKNKER 51
>BC037869-1|AAH37869.1| 512|Homo sapiens tigger transposable
element derived 4 protein.
Length = 512
Score = 44.0 bits (99), Expect = 5e-04
Identities = 18/53 (33%), Positives = 35/53 (66%)
Frame = -3
Query: 406 TFKMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKK 248
T ++ +K+K ++IE+K II+ +ESG ++ EYG+ +++S+I K + K
Sbjct: 10 TLPVTVKKKKSLSIEEKIDIINAVESGKKKAEIAAEYGIKKNSLSSIMKNKDK 62
>BC109202-1|AAI09203.1| 524|Homo sapiens jerky homolog-like (mouse)
protein.
Length = 524
Score = 42.7 bits (96), Expect = 0.001
Identities = 21/48 (43%), Positives = 30/48 (62%)
Frame = -3
Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKK 248
+RKR + I+DK II KLE G S+K L YG+ +T+ I K ++K
Sbjct: 4 KRKRVVLTIKDKLDIIKKLEDGGSSKQLAVIYGIGETTVRDIRKNKEK 51
>BC069632-1|AAH69632.1| 549|Homo sapiens tigger transposable
element derived 7 protein.
Length = 549
Score = 41.1 bits (92), Expect = 0.004
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 MSQR-KRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFM 233
M++R K +N+E+K +++S++E+G S K + E+G+S ST I K +K F+
Sbjct: 1 MNKRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFV 56
>BC069623-1|AAH69623.1| 549|Homo sapiens tigger transposable
element derived 7 protein.
Length = 549
Score = 41.1 bits (92), Expect = 0.004
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 MSQR-KRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFM 233
M++R K +N+E+K +++S++E+G S K + E+G+S ST I K +K F+
Sbjct: 1 MNKRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFV 56
>AF251050-1|AAK34940.1| 511|Homo sapiens jerky protein.
Length = 511
Score = 41.1 bits (92), Expect = 0.004
Identities = 20/56 (35%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Frame = -3
Query: 397 MSQR-KRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFM 233
M++R K +N+E+K +++S++E+G S K + E+G+S ST I K +K F+
Sbjct: 1 MNKRGKYTTLNLEEKMKVLSRIEAGRSLKSVMDEFGISKSTFYDIKKNKKLILDFV 56
>AK057033-1|BAB71351.1| 246|Homo sapiens protein ( Homo sapiens
cDNA FLJ32471 fis, clone SKNMC2000322, weakly similar to
MAJOR CENTROMERE AUTOANTIGEN B. ).
Length = 246
Score = 38.3 bits (85), Expect = 0.026
Identities = 19/47 (40%), Positives = 31/47 (65%)
Frame = -3
Query: 388 RKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKK 248
+KRK I +E K +II++ E G + +E G+ STISTI +++K+
Sbjct: 16 KKRKAITLEMKLKIIAQHEGGKPVMAIARELGLWQSTISTILRDKKQ 62
>BC043351-1|AAH43351.1| 568|Homo sapiens JRK protein protein.
Length = 568
Score = 37.1 bits (82), Expect = 0.059
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRF 236
+RKR + +++K I ++LE G S K L +EY V ST+ I + + RF
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRF 65
>AK127631-1|BAC87064.1| 556|Homo sapiens protein ( Homo sapiens
cDNA FLJ45729 fis, clone HHDPC2008185, moderately
similar to Mus musculus jerky (Jrk). ).
Length = 556
Score = 37.1 bits (82), Expect = 0.059
Identities = 19/52 (36%), Positives = 30/52 (57%)
Frame = -3
Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRF 236
+RKR + +++K I ++LE G S K L +EY V ST+ I + + RF
Sbjct: 14 KRKRVVLTLKEKIDICTRLEKGESRKALMQEYNVGMSTLYDIRAHKAQLLRF 65
>X55039-1|CAA38879.1| 599|Homo sapiens centromere autoantigen B
(CENP-B) protein.
Length = 599
Score = 34.7 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -3
Query: 385 KRKQINIEDKSRIISKLESG--ISNKDLTKEYGVSHSTISTIWKERK 251
KR+Q+ +KSRII ++E + ++ + + + ST+STI K ++
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50
>BC053847-1|AAH53847.1| 599|Homo sapiens centromere protein B,
80kDa protein.
Length = 599
Score = 34.7 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -3
Query: 385 KRKQINIEDKSRIISKLESG--ISNKDLTKEYGVSHSTISTIWKERK 251
KR+Q+ +KSRII ++E + ++ + + + ST+STI K ++
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50
>AL109804-11|CAC17547.1| 599|Homo sapiens centromere protein B,
80kDa protein.
Length = 599
Score = 34.7 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -3
Query: 385 KRKQINIEDKSRIISKLESG--ISNKDLTKEYGVSHSTISTIWKERK 251
KR+Q+ +KSRII ++E + ++ + + + ST+STI K ++
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50
>AF002713-1|AAB70165.1| 125|Homo sapiens centromere protein B
protein.
Length = 125
Score = 34.7 bits (76), Expect = 0.32
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Frame = -3
Query: 385 KRKQINIEDKSRIISKLESG--ISNKDLTKEYGVSHSTISTIWKERK 251
KR+Q+ +KSRII ++E + ++ + + + ST+STI K ++
Sbjct: 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIPPSTLSTILKNKR 50
>AK126213-1|BAC86488.1| 262|Homo sapiens protein ( Homo sapiens
cDNA FLJ44225 fis, clone THYMU3006168. ).
Length = 262
Score = 32.3 bits (70), Expect = 1.7
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = -3
Query: 172 LY*SPYRFVCTCTIYIKHQRLLRLYMSSYNRF*LYVCFFFISYLLRDSVSC 20
+Y + + C C H +R Y+ SY R +++C F +Y+ SC
Sbjct: 131 MYIHIHAYACICMFMYAH---MRAYVYSYTRICIHICIFIYTYVCMCVCSC 178
>BC115737-1|AAI15738.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>BC114964-1|AAI14965.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AY013249-1|AAG48509.1| 1272|Homo sapiens hUPF2 protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AL645617-1|CAI16755.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AL138898-4|CAH73458.1| 1272|Homo sapiens UPF2 regulator of nonsense
transcripts homolog (yeast) protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AF318574-1|AAG60689.1| 1272|Homo sapiens UPF2 protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AF301013-1|AAG33225.1| 1272|Homo sapiens regulator of nonsense
transcripts 2 protein.
Length = 1272
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 637 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 667
>AF146760-1|AAF67469.1| 517|Homo sapiens septin 10 protein.
Length = 517
Score = 31.9 bits (69), Expect = 2.2
Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Frame = -3
Query: 385 KRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFMTIIF*K*NE 206
+ +++ +E+K R++ + S K T E S S ++T RK+ + T IF K
Sbjct: 400 QEERMKLEEKRRLLEEEIIAFSKKKATSEIFHSQSFLATGSNLRKRTRTVRTPIFCKTEV 459
Query: 205 PEQR--SIQ---ILRKL-Y*SPYRFVCTCTIYIKHQRLLRLYMSSY 86
PE R S Q I +KL + +C T Q L ++M Y
Sbjct: 460 PEHRRSSSQANFIKKKLEVCFDFAVICFITSIFGEQPQLLIFMEKY 505
>AB037829-1|BAA92646.1| 1298|Homo sapiens KIAA1408 protein protein.
Length = 1298
Score = 31.9 bits (69), Expect = 2.2
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = -3
Query: 436 APKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
A LC ++R F+ RK+ QINIE K++ +
Sbjct: 663 AEDLCSMLRGDFRFHVRKKDQINIETKNKTV 693
>Z75330-1|CAA99731.1| 1258|Homo sapiens nuclear protein SA-1
protein.
Length = 1258
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 53 KKKTYVQSKSVITAHIQS*QPLMFNVYRASTNKSIGTLIKLPQYLYASLF 202
++KT + ++ +T H P++ + Y A K + L+++PQY ++
Sbjct: 556 ERKTQIDDRNKLTEHFIITLPMLLSKYSADAEK-VANLLQIPQYFDLEIY 604
>U49973-1|AAB61714.1| 454|Homo sapiens putative transposase
protein.
Length = 454
Score = 30.3 bits (65), Expect = 6.8
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -3
Query: 394 SQRK-RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
S+RK R + + K +I E G+S ++ ++ G+ T+S + ++KF
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRKLGLLRQTVSQVVNAKEKF 57
>BC064699-1|AAH64699.1| 1221|Homo sapiens STAG1 protein protein.
Length = 1221
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 53 KKKTYVQSKSVITAHIQS*QPLMFNVYRASTNKSIGTLIKLPQYLYASLF 202
++KT + ++ +T H P++ + Y A K + L+++PQY ++
Sbjct: 556 ERKTQIDDRNKLTEHFIITLPMLLSKYSADAEK-VANLLQIPQYFDLEIY 604
>AK223583-1|BAD97303.1| 593|Homo sapiens tigger transposable
element derived 5 variant protein.
Length = 593
Score = 30.3 bits (65), Expect = 6.8
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = -3
Query: 382 RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKFKRFM 233
RK +I+DK + I +++ G + +++GV T+ K+ K + F+
Sbjct: 4 RKAYSIKDKLQAIERVKGGERQASVCRDFGVPGGTLRGCLKDEPKLRWFL 53
>AB210023-1|BAE06105.1| 1275|Homo sapiens STAG1 variant protein
protein.
Length = 1275
Score = 30.3 bits (65), Expect = 6.8
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 53 KKKTYVQSKSVITAHIQS*QPLMFNVYRASTNKSIGTLIKLPQYLYASLF 202
++KT + ++ +T H P++ + Y A K + L+++PQY ++
Sbjct: 573 ERKTQIDDRNKLTEHFIITLPMLLSKYSADAEK-VANLLQIPQYFDLEIY 621
>BC063500-1|AAH63500.2| 591|Homo sapiens tigger transposable
element derived 1 protein.
Length = 591
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 394 SQRK-RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
S+RK R + + K +I E G+S ++ + G+ T+S + ++KF
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKF 57
>BC035143-1|AAH35143.2| 591|Homo sapiens tigger transposable
element derived 1 protein.
Length = 591
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 394 SQRK-RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
S+RK R + + K +I E G+S ++ + G+ T+S + ++KF
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKF 57
>AK056329-1|BAB71153.1| 591|Homo sapiens protein ( Homo sapiens
cDNA FLJ31767 fis, clone NT2RI2007884, weakly similar to
ARS BINDING PROTEIN 1. ).
Length = 591
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 394 SQRK-RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
S+RK R + + K +I E G+S ++ + G+ T+S + ++KF
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKF 57
>AC092165-4|AAY24104.1| 591|Homo sapiens unknown protein.
Length = 591
Score = 29.9 bits (64), Expect = 9.0
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -3
Query: 394 SQRK-RKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
S+RK R + + K +I E G+S ++ + G+ T+S + ++KF
Sbjct: 7 SERKSRTSLTLNQKLEMIKLSEEGMSKAEIGRRLGLLRQTVSQVVNAKEKF 57
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,939,506
Number of Sequences: 237096
Number of extensions: 1804583
Number of successful extensions: 3152
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 3045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3152
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7951235188
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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