Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE013599-3304|AAM71024.1|  275|Drosophila melanogaster CG30401-P...    36   0.069
AE013599-3303|AAM71023.1|  377|Drosophila melanogaster CG30401-P...    36   0.069
BT024221-1|ABC86283.1| 1241|Drosophila melanogaster RE04053p pro...    30   3.4  
BT009938-1|AAQ22407.1|  698|Drosophila melanogaster SD07232p pro...    30   3.4  
AE014298-1113|AAF46314.1| 1241|Drosophila melanogaster CG2253-PA...    30   3.4  

>AE013599-3304|AAM71024.1|  275|Drosophila melanogaster CG30401-PA,
           isoform A protein.
          Length = 275

 Score = 35.5 bits (78), Expect = 0.069
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKER 254
           +R R Q++++DK R I+++  G +   +++E GV  ST+   W +R
Sbjct: 10  KRPRVQVSLDDKERAIARIRGGETKAGISRELGVPESTVRG-WVKR 54


>AE013599-3303|AAM71023.1|  377|Drosophila melanogaster CG30401-PB,
           isoform B protein.
          Length = 377

 Score = 35.5 bits (78), Expect = 0.069
 Identities = 15/46 (32%), Positives = 29/46 (63%)
 Frame = -3

Query: 391 QRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKER 254
           +R R Q++++DK R I+++  G +   +++E GV  ST+   W +R
Sbjct: 112 KRPRVQVSLDDKERAIARIRGGETKAGISRELGVPESTVRG-WVKR 156


>BT024221-1|ABC86283.1| 1241|Drosophila melanogaster RE04053p
           protein.
          Length = 1241

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 445 TQDAPKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
           T  A  L  ++RK FK    K+ Q+NIE K +I+
Sbjct: 577 TDVATDLAELLRKEFKWHIHKKNQLNIETKLKIV 610


>BT009938-1|AAQ22407.1|  698|Drosophila melanogaster SD07232p
           protein.
          Length = 698

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 445 TQDAPKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
           T  A  L  ++RK FK    K+ Q+NIE K +I+
Sbjct: 577 TDVATDLAELLRKEFKWHIHKKNQLNIETKLKIV 610


>AE014298-1113|AAF46314.1| 1241|Drosophila melanogaster CG2253-PA
           protein.
          Length = 1241

 Score = 29.9 bits (64), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 445 TQDAPKLCGVIRKTFKMSQRKRKQINIEDKSRII 344
           T  A  L  ++RK FK    K+ Q+NIE K +I+
Sbjct: 577 TDVATDLAELLRKEFKWHIHKKNQLNIETKLKIV 610


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,719,732
Number of Sequences: 53049
Number of extensions: 554664
Number of successful extensions: 1330
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1330
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3026039247
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)