Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.      29   4.2  
AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.      29   4.2  
AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1 suppres...    29   4.2  
U23518-3|AAC70885.1|  109|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin monoox...    28   7.3  
AC006663-1|AAF39901.1|  518|Caenorhabditis elegans Flavin-contai...    28   7.3  

>AF519108-1|AAM74222.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -3

Query: 427 LCGVIRKTF--KMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSH--STISTIWK 260
           LC +  + F  K    + ++I++E+K     + E   S +D  KE+ + H  S + T  K
Sbjct: 625 LCKICGRGFIEKSHLVRHERIHLEEKPFKCDQCEYASSRRDKLKEHIIKHHNSEVLTFQK 684

Query: 259 -ERKKFKR 239
            +R+K+KR
Sbjct: 685 TQRRKYKR 692


>AF502568-1|AAM74151.1|  909|Caenorhabditis elegans EOR-1 protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -3

Query: 427 LCGVIRKTF--KMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSH--STISTIWK 260
           LC +  + F  K    + ++I++E+K     + E   S +D  KE+ + H  S + T  K
Sbjct: 625 LCKICGRGFIEKSHLVRHERIHLEEKPFKCDQCEYASSRRDKLKEHIIKHHNSEVLTFQK 684

Query: 259 -ERKKFKR 239
            +R+K+KR
Sbjct: 685 TQRRKYKR 692


>AF100669-8|AAK39268.1|  909|Caenorhabditis elegans Egl-1
           suppressor/dio uptake defective/raf enhancer protein 1
           protein.
          Length = 909

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 20/68 (29%), Positives = 36/68 (52%), Gaps = 5/68 (7%)
 Frame = -3

Query: 427 LCGVIRKTF--KMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSH--STISTIWK 260
           LC +  + F  K    + ++I++E+K     + E   S +D  KE+ + H  S + T  K
Sbjct: 625 LCKICGRGFIEKSHLVRHERIHLEEKPFKCDQCEYASSRRDKLKEHIIKHHNSEVLTFQK 684

Query: 259 -ERKKFKR 239
            +R+K+KR
Sbjct: 685 TQRRKYKR 692


>U23518-3|AAC70885.1|  109|Caenorhabditis elegans Hypothetical
           protein F21D12.5 protein.
          Length = 109

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -3

Query: 409 KTFKMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKK 248
           K    S    + + +ED+ +I+   E G     + +  GV+HS +S I    ++
Sbjct: 12  KAVGRSYNPGRPLCLEDRKKIVRLYEEGCRVSHIARLIGVTHSCVSKIMSRYRR 65


>AJ582073-1|CAE46543.1|  518|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 570 SWILIAIEDKCGIPIQLVYNTA*PVVLTDLI 662
           SWI   + D+ G P+ LV+NT   + L D+I
Sbjct: 220 SWIFSRLSDR-GEPVDLVFNTKFQMQLVDMI 249


>AC006663-1|AAF39901.1|  518|Caenorhabditis elegans
           Flavin-containing monooxygenasefamily protein 5 protein.
          Length = 518

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +3

Query: 570 SWILIAIEDKCGIPIQLVYNTA*PVVLTDLI 662
           SWI   + D+ G P+ LV+NT   + L D+I
Sbjct: 220 SWIFSRLSDR-GEPVDLVFNTKFQMQLVDMI 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,551,458
Number of Sequences: 27780
Number of extensions: 323066
Number of successful extensions: 884
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)