Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   4.8  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   8.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   8.4  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = -2

Query: 353 AYYIQARERDFKQRLNKGIWCITLDNFNHLERAEKIQTLYDNNFLK 216
           A  +QA   D K  L   +  + +D  NH+ R + +  L     LK
Sbjct: 302 AIIVQAELMDLKGDLEGLVEGVIIDCSNHIGRGKLVTALIQRGTLK 347


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = +1

Query: 253 SALSKWLKLSSVIHHIPLLSLCLKSRSLAWI 345
           S  S W KL +++H  P      K R   W+
Sbjct: 448 SKSSGWRKLRNIVHWTPFFQTYKKQR-YPWV 477


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 262 SKWLKLSSVIHHIPLLSLCLKSRSLAWI 345
           S W KL +++H  P      K R   W+
Sbjct: 217 SGWRKLRNIVHWTPFFQTYKKQR-YPWV 243


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 262 SKWLKLSSVIHHIPLLSLCLKSRSLAWI 345
           S W KL +++H  P      K R   W+
Sbjct: 132 SGWRKLRNIVHWTPFFQTYKKQR-YPWV 158


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 451 IYTQDAPKLCGVIRK 407
           IYT D P+   V+RK
Sbjct: 255 IYTHDIPETYNVVRK 269


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 10/29 (34%), Positives = 12/29 (41%)
 Frame = -1

Query: 435 HQNFVELFAKLSKCRKEKENKLILKTNRV 349
           H NF+E      K R  K   L    NR+
Sbjct: 579 HGNFIESLGNYYKIRDSKVKTLDASHNRI 607


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 451 IYTQDAPKLCGVIRK 407
           IYT D P+   V+RK
Sbjct: 255 IYTHDIPETYNVVRK 269


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,305
Number of Sequences: 438
Number of extensions: 4322
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)