Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0276
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899...    30   1.3  
At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899...    30   1.3  
At2g32180.1 68415.m03933 expressed protein                             30   1.3  
At5g09420.1 68418.m01091 chloroplast outer membrane translocon s...    27   8.9  

>At2g32650.2 68415.m03989 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 158 GTLIKLPQYLYASLFWLVSFSKNYCHKAF 244
           G L++ P++L A LF+   + + YC KA+
Sbjct: 108 GDLVRYPKWLEADLFFNAPYIERYCFKAY 136


>At2g32650.1 68415.m03988 expressed protein contains Pfam PF05899:
           Protein of unknown function (DUF861)
          Length = 139

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 158 GTLIKLPQYLYASLFWLVSFSKNYCHKAF 244
           G L++ P++L A LF+   + + YC KA+
Sbjct: 108 GDLVRYPKWLEADLFFNAPYIERYCFKAY 136


>At2g32180.1 68415.m03933 expressed protein 
          Length = 139

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +2

Query: 158 GTLIKLPQYLYASLFWLVSFSKNYCHKAF 244
           G L++ P++L A LF+   + + YC KA+
Sbjct: 108 GDLVRYPKWLEADLFFNAPYIERYCFKAY 136


>At5g09420.1 68418.m01091 chloroplast outer membrane translocon
           subunit, putative similar to component of chloroplast
           outer membrane translocon Toc64 [Pisum sativum]
           GI:7453538; contains Pfam profiles PF01425: Amidase,
           PF00515: TPR Domain
          Length = 603

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 18/84 (21%), Positives = 41/84 (48%)
 Frame = -3

Query: 424 CGVIRKTFKMSQRKRKQINIEDKSRIISKLESGISNKDLTKEYGVSHSTISTIWKERKKF 245
           CG++   F+ SQ     + +   S+ +  +    S+  +  + G +   +S +   R++ 
Sbjct: 188 CGILG--FRPSQGTVSSVGVLPNSQSLETVGWFASDPSVLCQVGHALLNLSAVTHRRQRS 245

Query: 244 KRFMTIIF*K*NEPEQRSIQILRK 173
             F   +F   + P+Q+S+Q++RK
Sbjct: 246 LIFADDLFELSDIPKQKSVQVVRK 269


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,311,618
Number of Sequences: 28952
Number of extensions: 285041
Number of successful extensions: 686
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)