Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0275
         (686 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    95   8e-21
SPAC17G8.11c |||mannosyltransferase complex subunit |Schizosacch...    26   4.4  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    25   7.8  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 95.1 bits (226), Expect = 8e-21
 Identities = 46/72 (63%), Positives = 57/72 (79%), Gaps = 1/72 (1%)
 Frame = +3

Query: 258 IAVPTGIKIFR*LATIHGTQINYNP-NIL*RLGFVFLFTVGGLTGVILANSSIDITLHDT 434
           IA+PTGIKIF  LAT+ G  I ++   +L  +GF+ LFT+GGLTGVIL+NS +DI  HDT
Sbjct: 318 IAIPTGIKIFSWLATLTGGAIQWSRVPMLYAIGFLILFTIGGLTGVILSNSVLDIAFHDT 377

Query: 435 YYVVAHFHYVLS 470
           Y+VVAHFHYVLS
Sbjct: 378 YFVVAHFHYVLS 389



 Score = 92.7 bits (220), Expect = 5e-20
 Identities = 43/91 (47%), Positives = 58/91 (63%)
 Frame = +1

Query: 10  ILYQHLF*FFGHPEVYILILPGFGIISHIISQERGKKETFXXXXXXXXXXXXXXXXFIV* 189
           +LYQHLF FFGHPEVYILI+P FG++SHII      K  F                 +V 
Sbjct: 236 VLYQHLFWFFGHPEVYILIMPAFGVVSHII-PSLAHKPIFGKEGMLWAMLSIALLGLMVW 294

Query: 190 AHHIFTVGIDIDTRAYFTSATILLLYQQELK 282
           +HH+FTVG+D+DTRAYF++AT+++     +K
Sbjct: 295 SHHLFTVGLDVDTRAYFSAATMVIAIPTGIK 325



 Score = 41.9 bits (94), Expect = 8e-05
 Identities = 20/39 (51%), Positives = 23/39 (58%)
 Frame = +2

Query: 497 GIY**YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 613
           G Y   P   GL  N  +  IQF+ +FIGVNI F PQHF
Sbjct: 398 GAYYWSPKMFGLMYNETLASIQFWILFIGVNIVFGPQHF 436


>SPAC17G8.11c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 356

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 484 LQLLGDLLMISFIYR-PFIKFLYTKNSIFYNIYWSKY 591
           LQ++ +L   +F Y  P++  +Y+   +F +I WS +
Sbjct: 182 LQVVRNLPRFAFNYHFPYLTVMYSTGPLFLSIIWSAW 218


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +1

Query: 523 YRPFIKFLYTKNSIFYNIYWSKYNIFSTTFF*GL 624
           +RPF KFL  K  IF + YW +  + S T + GL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQ-TVLSITNWLGL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,255,703
Number of Sequences: 5004
Number of extensions: 39042
Number of successful extensions: 110
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)