Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0275
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  109   2e-24
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)                 29   4.7  
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  109 bits (262), Expect = 2e-24
 Identities = 50/71 (70%), Positives = 60/71 (84%)
 Frame = +3

Query: 258 IAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGVILANSSIDITLHDTY 437
           IAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGVILANSS+D+ +HDTY
Sbjct: 16  IAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGVILANSSLDVVMHDTY 75

Query: 438 YVVAHFHYVLS 470
           YVVAHFHYVLS
Sbjct: 76  YVVAHFHYVLS 86



 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 21/39 (53%), Positives = 24/39 (61%)
 Frame = +2

Query: 497 GIY**YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 613
           G Y  +   TG   N    KI F+ +FIGVNITFFPQHF
Sbjct: 96  GFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 134



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +1

Query: 214 IDIDTRAYFTSATILLLYQQELK 282
           +++DTRAYFT+AT+++     +K
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIK 23


>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 143

 Score = 44.8 bits (101), Expect = 7e-05
 Identities = 21/39 (53%), Positives = 24/39 (61%)
 Frame = +2

Query: 497 GIY**YPLFTGLSLNSYILKIQFFTIFIGVNITFFPQHF 613
           G Y  +   TG   N    KI F+ +FIGVNITFFPQHF
Sbjct: 10  GFYFWFGKITGYCYNELYGKIHFWIMFIGVNITFFPQHF 48


>SB_30032| Best HMM Match : 7tm_1 (HMM E-Value=3.1e-06)
          Length = 819

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = +1

Query: 478 QYLQLLGDLLMISFIYRPFIKFLYTKNSIF-YNIYWSKYNIFSTTFF*GLAGIPRRYFRI 654
           +Y++ L  L  +S + R ++K L +   +      + K  +F  T F    G+ RRY RI
Sbjct: 201 EYVKALMSLCEVSTMTREYVKALVSLCEVLTMTREYVKALVFVGTSFSLPLGLERRYHRI 260

Query: 655 SQTHI 669
           S+ H+
Sbjct: 261 SRCHM 265


>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 707

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = +1

Query: 502 LLMISFIYRPFIKFLYTKNSIFYNIYWSK--YNIF 600
           L  + FIY   + FL +KN  F+  YW+   YN F
Sbjct: 11  LRYVGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAF 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,258,253
Number of Sequences: 59808
Number of extensions: 246995
Number of successful extensions: 503
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)