Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0275
         (686 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.2  
AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine re...    28   7.2  

>AF039710-7|AAB96687.1|  123|Caenorhabditis elegans Hypothetical
           protein C46E10.2 protein.
          Length = 123

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = +1

Query: 565 FYNIYWSKYNIFSTTF 612
           F+NIYWS Y IF  TF
Sbjct: 11  FFNIYWSFYAIFGFTF 26


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 90  SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 206
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


>AF125459-9|AAD12845.2|  328|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 22 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
 Frame = +2

Query: 527 GLSLNSYILK-----IQFFTIFIGVNITFFP--QHFFRV*PGYLDDISGYPRLIYFH 676
           GL++  Y +K     +  FT+ +G+  T F   Q +F     Y+  I GY  L+ FH
Sbjct: 226 GLTMLEYRIKNVERHLTIFTLIMGLQTTLFAFTQIYFAFLATYIPSIRGYILLLAFH 282


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,005,526
Number of Sequences: 27780
Number of extensions: 207093
Number of successful extensions: 506
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)