Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0275
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.68 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    23   2.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   6.3  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    22   6.3  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    22   6.3  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -1

Query: 566 KIEFLVYKNLMKGL*IKDIINKSPNNCKY 480
           ++   VY+ ++ G  + +IIN++  N KY
Sbjct: 36  RVTMYVYEEIINGKKLTEIINETHENVKY 64


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 332 RVIINLSSMYCS*SSKNFNSCWYSNNIVAEVKYARVS 222
           ++I +LS+ Y   +  N+N+  Y+NN   +++Y  ++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 332 RVIINLSSMYCS*SSKNFNSCWYSNNIVAEVKYARVS 222
           ++I +LS+ Y   +  N+N+  Y+NN   +++Y  ++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 332 RVIINLSSMYCS*SSKNFNSCWYSNNIVAEVKYARVS 222
           ++I +LS+ Y   +  N+N+  Y+NN   +++Y  ++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/37 (27%), Positives = 23/37 (62%)
 Frame = -1

Query: 332 RVIINLSSMYCS*SSKNFNSCWYSNNIVAEVKYARVS 222
           ++I +LS+ Y   +  N+N+  Y+NN   +++Y  ++
Sbjct: 80  KIISSLSNNYKYSNYNNYNNNNYNNNNYKKLQYYNIN 116


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 351 GFVFLFTVGGLTGVI 395
           G V +  VGGLTG+I
Sbjct: 201 GSVVIHVVGGLTGLI 215


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 475 EQYLQLLGDLLMISFIYRPFIKFLYTKN 558
           E++ ++LGD  +++ + +P   F  +KN
Sbjct: 15  EEFAKVLGDQNLVNTVLQPRPSFELSKN 42


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 8/28 (28%), Positives = 18/28 (64%)
 Frame = +1

Query: 475 EQYLQLLGDLLMISFIYRPFIKFLYTKN 558
           E++ ++LGD  +++ + +P   F  +KN
Sbjct: 17  EEFAKVLGDQNLVNTVLQPRPSFELSKN 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,993
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)