Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0274
         (687 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    84   2e-17
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.5  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.9  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 84.2 bits (199), Expect = 2e-17
 Identities = 42/80 (52%), Positives = 51/80 (63%)
 Frame = +2

Query: 269 LGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 448
           +GF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 449 GLSLNSYILKIQFFTIFIGV 508
           GL  N  +  IQF+ +FIGV
Sbjct: 408 GLMYNETLASIQFWILFIGV 427



 Score = 71.7 bits (168), Expect = 9e-14
 Identities = 32/56 (57%), Positives = 46/56 (82%), Gaps = 2/56 (3%)
 Frame = +3

Query: 102 IV*AHHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN--PIFY 263
           +V +HH+FTVG+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++  P+ Y
Sbjct: 292 MVWSHHLFTVGLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWSRVPMLY 347



 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 18/31 (58%), Positives = 24/31 (77%)
 Frame = +1

Query: 508 NITFFPQHFLGLAGIPRRYSDYPDSYMSWKY 600
           NI F PQHFLGL G+PRR  DYP++++ W +
Sbjct: 428 NIVFGPQHFLGLNGMPRRIPDYPEAFVGWNF 458


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 445 YRPFIKFLYTKNSIFYNIYWSNITFFPQHFLGL 543
           +RPF KFL  K  IF + YW        ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 646 NYLIHREIYEPNEENYISMTYMSLDNL 566
           +YLI +E Y  N  N++  T MS+ NL
Sbjct: 482 DYLISKEEYIENSGNFVVGTEMSIYNL 508


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,987,020
Number of Sequences: 5004
Number of extensions: 34248
Number of successful extensions: 98
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)