Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0274
         (687 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0744 - 19867604-19867686,19868075-19869872,19870777-198708...    29   3.5  
08_02_1243 - 25527523-25527960,25527993-25528604                       28   6.0  

>09_04_0744 -
           19867604-19867686,19868075-19869872,19870777-19870801,
           19872313-19872710
          Length = 767

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/59 (32%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -3

Query: 652 FINYLIHREIYEPNEENYISMTYMSLDNLNIVE-VFQLNL-KNVEEKMLYYSNKYCKKL 482
           F N LI+R + +P+++  IS + +S+D   +   V Q+ L K++EE  L+   K+C ++
Sbjct: 269 FYNELINRSMIQPSKKR-ISPS-VSVDRCRVHSMVLQIILSKSIEENQLFIIKKHCNEV 325


>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +2

Query: 29  KRKKRNFWLFRNNLCYTSNWVIRIYCLS 112
           +R+ R FWLFR   C+   +  RI CLS
Sbjct: 19  RRRGRRFWLFRFRSCFLDRFRRRI-CLS 45


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,672,284
Number of Sequences: 37544
Number of extensions: 158696
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)