Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0274
(687 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 95 6e-20
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 60 2e-09
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_17813| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.8) 28 8.1
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 94.7 bits (225), Expect = 6e-20
Identities = 47/85 (55%), Positives = 55/85 (64%)
Frame = +2
Query: 269 LGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXXN*YPLFT 448
+GFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 449 GLSLNSYILKIQFFTIFIGVI*HFF 523
G N KI F+ +FIGV FF
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFF 130
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +1
Query: 466 LYTKNSIFYNIYWSNITFFPQHFLGLAGIPRRYSDYPDSYMSW 594
LY K + NITFFPQHFLGLAG PRRYSD+ D Y W
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGW 154
Score = 54.4 bits (125), Expect = 8e-08
Identities = 24/36 (66%), Positives = 32/36 (88%)
Frame = +3
Query: 135 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQI 242
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAI 36
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 60.1 bits (139), Expect = 2e-09
Identities = 26/43 (60%), Positives = 28/43 (65%)
Frame = +1
Query: 466 LYTKNSIFYNIYWSNITFFPQHFLGLAGIPRRYSDYPDSYMSW 594
LY K + NITFFPQHFLGLAG PRRYSD+ D Y W
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGW 68
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 16/22 (72%), Positives = 17/22 (77%)
Frame = +1
Query: 529 HFLGLAGIPRRYSDYPDSYMSW 594
HFLGLAG PRRYSD+ D Y W
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGW 22
>SB_36505| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +3
Query: 114 HHIFTVGIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNP 254
HH+ T+ I + T+I PT I + + +H T IN +P
Sbjct: 14 HHLHTIIIHLHPTVIHLHPTVIFLHPTVIHLHPTVLNLHPTIINLHP 60
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 27.9 bits (59), Expect = 8.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +1
Query: 433 ISFIYRPFIKFLYTKNSIFYNIYWSNITF 519
+ FIY + FL +KN F+ YW+ + +
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVY 42
>SB_17813| Best HMM Match : CtaG_Cox11 (HMM E-Value=3.8)
Length = 239
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
Frame = -3
Query: 577 LDNLNIVEVFQLNLKNVEE--KMLYYSNKYCKKLN 479
LD +V+VF+ NLK++E+ K + ++ C LN
Sbjct: 51 LDTCKLVDVFEANLKSMEDYRKAINHTFSSCNMLN 85
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,086,295
Number of Sequences: 59808
Number of extensions: 205239
Number of successful extensions: 447
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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