Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0274
         (687 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    29   2.4  
U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical p...    29   4.1  
Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -3

Query: 646 NYLIHREIYEPNEENYISMTYMSLDNLNIVEVFQLNLK 533
           N+L+  E  E   EN +   Y + + L   E+F  N+K
Sbjct: 142 NFLLKNETSESKSENVMRQVYRTCEGLKNEEIFNANMK 179


>U55363-10|AAL11103.1|  364|Caenorhabditis elegans Hypothetical
           protein ZC404.13 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 449 GLSLNSYILKIQFFTIFIGVI*HF 520
           GLS+N YI   QFF++F  ++ +F
Sbjct: 289 GLSINDYINYFQFFSVFTNLLAYF 312


>Z81587-2|CAB04702.2|  339|Caenorhabditis elegans Hypothetical
           protein T06G6.2 protein.
          Length = 339

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +2

Query: 11  SYYFTRKRKKRNFWLFRNNLCYTSNWVIRIYCLSSSYIH 127
           SYYF R    R  W  +NN+   S  +I + CL +S IH
Sbjct: 42  SYYFARLAI-RTLW--KNNIFSNSTRLILLVCLLNSIIH 77


>U64858-5|AAB18284.1|  409|Caenorhabditis elegans Hypothetical
           protein C16D9.4 protein.
          Length = 409

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 451 PFIKFLYTKNSIFYNIYWSNITFFPQHFLGLAGIPRR 561
           P   F+++ +S F  ++ S +TFFP + + L   P R
Sbjct: 286 PIYFFIHSSHSNFATLFKSLLTFFPTNSISLLKDPNR 322


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,473,158
Number of Sequences: 27780
Number of extensions: 176239
Number of successful extensions: 499
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)