Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0274
         (687 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13440.1 68416.m01690 expressed protein                             28   5.0  
At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to ...    28   6.7  
At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to ...    28   6.7  

>At3g13440.1 68416.m01690 expressed protein
          Length = 278

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 634 HREIYEPNEENYISMTYMSLDNLNIVE 554
           HRE+YEP ++++  +  +  D  N++E
Sbjct: 46  HREVYEPCDDSFALVDALLADRTNLIE 72


>At5g51230.2 68418.m06353 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 626

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 628 EIYEPNEENYISMTYMSLDNLNIVEVFQLNLKNVEEKMLYYSNKYCK 488
           E+    +  Y S +Y  + + +++++ +L   NV     YY+NK  K
Sbjct: 271 EVGSTEKSPYSSFSYNDISSSSLLQIIRLRTGNVVFNYRYYNNKLQK 317


>At5g51230.1 68418.m06352 embryonic flower 2 (EMF2) identical to
           embryonic flower 2 [Arabidopsis thaliana] GI:14276050;
           supporting cDNA gi|14276049|dbj|AB053171.1|
          Length = 631

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = -3

Query: 628 EIYEPNEENYISMTYMSLDNLNIVEVFQLNLKNVEEKMLYYSNKYCK 488
           E+    +  Y S +Y  + + +++++ +L   NV     YY+NK  K
Sbjct: 271 EVGSTEKSPYSSFSYNDISSSSLLQIIRLRTGNVVFNYRYYNNKLQK 317


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,474,795
Number of Sequences: 28952
Number of extensions: 149618
Number of successful extensions: 300
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)