Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0273
         (693 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.6  
UniRef50_A0YMX8 Cluster: Putative uncharacterized protein; n=1; ...    35   2.2  
UniRef50_A6LW61 Cluster: Putative uncharacterized protein; n=1; ...    34   2.9  
UniRef50_Q16FG4 Cluster: Putative uncharacterized protein; n=4; ...    33   5.0  
UniRef50_UPI0000F1F536 Cluster: PREDICTED: hypothetical protein;...    33   6.6  
UniRef50_UPI00004D78FB Cluster: UPI00004D78FB related cluster; n...    33   6.6  
UniRef50_Q6YR49 Cluster: Phosphatidate cytidylyltransferase; n=2...    33   8.8  

>UniRef50_A3DIS3 Cluster: Putative uncharacterized protein; n=1;
           Clostridium thermocellum ATCC 27405|Rep: Putative
           uncharacterized protein - Clostridium thermocellum
           (strain ATCC 27405 / DSM 1237)
          Length = 249

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 357 ISQQFESAQYKHLYENY-YYSSRKKTINKWSDVLTIYNYNNNSMNSH 220
           +  +   ++YK+ Y +Y YY+S+KK I KWS +  I N  N     H
Sbjct: 204 VLNKISKSEYKNYYGSYDYYNSKKKYIKKWSQL--IKNLKNLKRGEH 248


>UniRef50_A0YMX8 Cluster: Putative uncharacterized protein; n=1;
           Lyngbya sp. PCC 8106|Rep: Putative uncharacterized
           protein - Lyngbya sp. PCC 8106
          Length = 758

 Score = 34.7 bits (76), Expect = 2.2
 Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
 Frame = -1

Query: 384 ISPGINR*GISQQ--FESAQYKHLYENYYYSSRKKTINKWSDVLTIYNYNNNSMNSHQLL 211
           I+P +NR G+  +  F+S++Y+ + +N    S+K   ++++  L +  Y NN  NSH+  
Sbjct: 125 IAPNLNRLGVWLRNFFKSSEYQAI-KNCALKSKKDWSHRYTSYLLVPEYINNEDNSHEQK 183

Query: 210 ELSQ 199
           E ++
Sbjct: 184 EFAR 187


>UniRef50_A6LW61 Cluster: Putative uncharacterized protein; n=1;
           Clostridium beijerinckii NCIMB 8052|Rep: Putative
           uncharacterized protein - Clostridium beijerinckii NCIMB
           8052
          Length = 89

 Score = 34.3 bits (75), Expect = 2.9
 Identities = 20/82 (24%), Positives = 40/82 (48%)
 Frame = -3

Query: 586 NKL*PK*YVHTPSNNVDINKAA*HTTNVVRYQFRFCQIRPSFVISNF*YVQSRNC*HDRK 407
           NK   K   +T + N+ +NK +   + ++ Y F+ C+   + + SN  Y+ ++N  H + 
Sbjct: 7   NKSNFKLVTYTTNKNISLNKVSKGISKILNYAFKLCKSVLNSLFSNSEYIYNKNSAHSK- 65

Query: 406 YGEMQSHHFTRHKPVRYITAIR 341
            G   ++  T    +R I + R
Sbjct: 66  -GSEYNYDITDATELRLIASRR 86


>UniRef50_Q16FG4 Cluster: Putative uncharacterized protein; n=4;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 689

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 438 YNHGTVDMTVNMEKCNRTIS--PGINR*GISQQFESAQYKHLYENYYYSSRKKTINKWSD 265
           YNH  +D  V ME C R +   P   R  +  +  +  + ++++   Y   +K  +++ +
Sbjct: 77  YNHALLDRAVCMEDCKRLVRRLPNATRKALRVEKFAIDFPYIFDPTVYQDAEKDRDRYGE 136

Query: 264 VLTI-YNYNNN 235
           +L I  NY  N
Sbjct: 137 LLDICVNYKLN 147


>UniRef50_UPI0000F1F536 Cluster: PREDICTED: hypothetical protein;
           n=6; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 573

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 345 FESAQYKHLYENYYYSSRKKTINKWSDVLTIYNYNNNSMNSH 220
           + S  Y + Y NYYYS+     N +      YNY NN+ N++
Sbjct: 483 YNSKYYNNTYYNYYYSTDNNNYNSY------YNYYNNTYNNY 518


>UniRef50_UPI00004D78FB Cluster: UPI00004D78FB related cluster; n=3;
           Xenopus tropicalis|Rep: UPI00004D78FB UniRef100 entry -
           Xenopus tropicalis
          Length = 592

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +2

Query: 443 LEVRNDERWPDLTKSKLITHYVCSMLCCFVNIYIIAWSVYILF 571
           +++RND    +L   KL+T + CSM   + N+ ++A+ + I F
Sbjct: 496 IDLRNDSSARNLFNEKLLTQFWCSMYHSYPNVTMLAFRILIPF 538


>UniRef50_Q6YR49 Cluster: Phosphatidate cytidylyltransferase; n=2;
           Candidatus Phytoplasma asteris|Rep: Phosphatidate
           cytidylyltransferase - Onion yellows phytoplasma
          Length = 305

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 473 DLTKSKLITHYVCSMLCCFVNIYIIAWSVYILFWL 577
           D++K+ LIT Y+  ++ C  +++ + W   +LF+L
Sbjct: 144 DVSKTFLITFYIGFLMACLFSLFFLHWHYLLLFFL 178


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 636,333,236
Number of Sequences: 1657284
Number of extensions: 11995564
Number of successful extensions: 30401
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28719
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30360
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)