Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0273
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    28   1.5  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    28   1.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.4  
SPBC4F6.15c |swi10|rad23|DNA repair endonuclease|Schizosaccharom...    26   5.9  
SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase Agn1|Schizo...    26   5.9  
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    26   5.9  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    25   7.9  
SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces p...    25   7.9  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/77 (22%), Positives = 35/77 (45%)
 Frame = -1

Query: 471 GHLSSFRTSNMYNHGTVDMTVNMEKCNRTISPGINR*GISQQFESAQYKHLYENYYYSSR 292
           G+    R +    H T D+TV++E+ +R  S  + R  + Q+   +    L +   +++ 
Sbjct: 123 GYSDMARANISMTHNTGDLTVSLEEASRLESENVKR--LRQEKRLSLIVDLDQTIIHATV 180

Query: 291 KKTINKWSDVLTIYNYN 241
             T+ +W       NY+
Sbjct: 181 DPTVGEWMSDPGNVNYD 197


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -1

Query: 336 AQYKHLYENYYYSSRKKTINKWSDVLTIYNYNNNSMNSHQLLELS 202
           +QY ++ ENY  +++K  I+  +D +   N+  N   S    ++S
Sbjct: 184 SQYANMPENYALNTKKSKISNENDTIFKANFQQNKYESLHAKQIS 228


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = -1

Query: 399 KCNRTISPGI-NR*GISQQFESAQ-YKHLYENYYYS----SRKKTINKWSDVLTIYNYNN 238
           KC    S  + NR G +++  + Q +K+L EN+         +  I +WSD++++ N   
Sbjct: 477 KCETEDSTNLTNREGEAEKTLNTQPWKNLIENFISELQAEEEENNITEWSDIISVRNDEE 536

Query: 237 NSM 229
           N +
Sbjct: 537 NQI 539


>SPBC4F6.15c |swi10|rad23|DNA repair
           endonuclease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -1

Query: 360 GISQQFESAQYKHLYENYYYSSRKKTINKWS--DVLTIYNYNNNSMNSHQLLELS 202
           GI   F S +Y HL+  Y YS   K    ++   +L + +  N+  +  +L++ S
Sbjct: 77  GICSLFLSLKYHHLHPEYIYSRISKLGKSYNLRILLILVDVENHQASIQELVKTS 131


>SPAC14C4.09 |agn1||glucan endo-1,3-alpha-glucosidase
           Agn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = -1

Query: 330 YKHL-YENYYYSSRKKTINKWSDVLTI 253
           Y HL Y+N+ Y S    I++W+++L++
Sbjct: 221 YTHLSYKNWAYKSDWLIIDRWNEMLSV 247


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 318 YENYYYSSRKK-TINKWSDVLTIYNYNNNSMNSHQLLELSQ*IHVMPLK 175
           YEN+ YS+ K   I KW + L   +  N   + H++ +  + +H  P+K
Sbjct: 150 YENFVYSADKSGLIQKW-EALQEKDTENRENDDHEIGKAIK-LHFRPIK 196


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 321 LYENYYYSSRKKTINKWSDVLTIYNYNNNSMNSHQL 214
           LY    YSSR +  N   +VL   N++ + +  H+L
Sbjct: 120 LYSEEMYSSRNRLSNMELEVLRALNFDTHIVIPHKL 155


>SPBC685.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
 Frame = -1

Query: 477 KSGHLSSFRTSNMYNHGTVDMTVNMEKCN-RTISPGINR*GISQQFESAQYKHLYENYYY 301
           KS   S  R  N +N    D++    K    +  PG ++  +S + +   Y HL+ NY+ 
Sbjct: 185 KSNFNSDIR--NYFNFKMYDLSFVDNKTRFSSRKPGASQI-LSSKVQLMYYVHLFLNYFP 241

Query: 300 SSRKKTINKWSDVLTIYNYNNNSMNSHQLLELSQ 199
           S  +K  + + D+   Y+   +S +    + LSQ
Sbjct: 242 SLGEKQQSIFRDISPTYSNRLHSQSHWWNMFLSQ 275


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,304
Number of Sequences: 5004
Number of extensions: 55200
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)