Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0273
(693 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0513 + 4059586-4059620,4060155-4060365,4060470-4060724,406... 32 0.38
08_01_1037 - 10536547-10536585,10536814-10537102,10537202-105373... 30 1.5
02_04_0663 + 24820745-24821065,24821415-24821861,24821949-248223... 30 2.0
12_02_0095 + 13559997-13560232,13561295-13561683,13562092-135623... 29 2.6
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815... 29 2.6
09_02_0348 - 7616686-7616802,7616888-7617176,7617259-7617429,761... 29 2.6
09_02_0173 + 5323749-5324602,5324681-5324851,5324934-5325222,532... 29 2.6
08_02_0621 - 19397038-19397076,19397305-19397593,19397676-193978... 29 2.6
03_02_0329 - 7498951-7498989,7499219-7499507,7499590-7499760,749... 29 2.6
12_02_0221 - 15855479-15855517,15855745-15856033,15856118-158562... 29 3.5
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 29 3.5
10_03_0036 - 7286425-7286463,7286686-7286974,7287306-7288192,728... 29 4.6
09_02_0516 - 10136400-10136516,10136606-10136894,10137578-101381... 29 4.6
04_01_0347 - 4546566-4546604,4546710-4546748,4546834-4547059,454... 29 4.6
12_02_1226 - 27182423-27182768,27182855-27183765 28 6.1
05_07_0317 - 29193940-29193978,29194208-29194496,29194579-291947... 28 8.1
>12_01_0513 +
4059586-4059620,4060155-4060365,4060470-4060724,
4060801-4060865,4061120-4061194,4061440-4061575,
4061661-4061753,4061838-4061983,4062074-4062174,
4062259-4062434,4063823-4063900,4063991-4064199,
4064286-4064378,4064888-4064971,4065405-4065506,
4065591-4065678,4065756-4065809,4065869-4066075,
4066970-4067026,4067171-4067225,4067737-4067813,
4067941-4068007,4068383-4068444,4068541-4068603,
4068702-4068830
Length = 905
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = -1
Query: 396 CNRTIS-PGINR*GISQQFESAQYKHLYENY-YYSSRKKTIN-KWSDVLTIYNYNNNSM 229
C+RT++ I G ++ YK +EN Y ++K+ +N K+ + + +NYN+ M
Sbjct: 384 CSRTVNMEDIKAIGFKMEYTLINYKVTFENLAYVEAKKRLVNGKYPEKILEWNYNSEHM 442
>08_01_1037 -
10536547-10536585,10536814-10537102,10537202-10537327,
10537336-10538291,10538379-10538825,10538904-10539632
Length = 861
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +3
Query: 159 KLLHVILMA*HVFIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
K+ H L+ F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 804 KIGHDTLIHKKDFPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEAMMNTYY 856
>02_04_0663 +
24820745-24821065,24821415-24821861,24821949-24822317,
24822324-24822835,24822914-24823084,24823284-24823434,
24823664-24823702
Length = 669
Score = 29.9 bits (64), Expect = 2.0
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Frame = +3
Query: 57 LSNDHKEALQIALST**RRPIDALHLILA---TPATYKLLHVILMA*HVFIVKAQGADDC 227
L NDH+E + +T R D +++ A K H L+ F VK Q D C
Sbjct: 576 LQNDHQEMVNYIYNTLWSRR-DKEYIMCAYNQQGGLRKTGHDTLIHKKDFPVKQQIGDQC 634
Query: 228 SWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
+ C+N +L + L FE N+++
Sbjct: 635 GFYVCHNMRLLYREKVKTLAEFEAMMNTYY 664
>12_02_0095 +
13559997-13560232,13561295-13561683,13562092-13562387,
13562475-13563361,13563440-13563562,13563693-13563981,
13564211-13564249
Length = 752
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 707 FPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEAMMNTYY 747
>11_04_0039 +
12679350-12680057,12680136-12680582,12680670-12681556,
12681635-12681805,12681872-12682160,12682390-12682428
Length = 846
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 801 FPVKQQIGDQCGFHVCHNIRLLYREKVKTLAEFEAMMNTYY 841
>09_02_0348 -
7616686-7616802,7616888-7617176,7617259-7617429,
7617508-7617680,7617789-7618394,7618482-7618793,
7619007-7619032,7619077-7619191
Length = 602
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +3
Query: 159 KLLHVILMA*HVFIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFE 296
K+ H L+ F+VK Q D C ++ C+N +L + L FE
Sbjct: 519 KIGHDTLIHKKDFLVKQQIGDQCGFHMCHNMRLLYREKVKTLAEFE 564
>09_02_0173 +
5323749-5324602,5324681-5324851,5324934-5325222,
5325452-5325490
Length = 450
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 405 FPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEAMMNTYY 445
>08_02_0621 -
19397038-19397076,19397305-19397593,19397676-19397824,
19399030-19399839,19399926-19400105,19400450-19400674,
19400750-19401157
Length = 699
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 654 FPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEAMMNTYY 694
>03_02_0329 -
7498951-7498989,7499219-7499507,7499590-7499760,
7499839-7500345,7500347-7500726,7500814-7501266
Length = 612
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 567 FPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFEAMMNTYY 607
>12_02_0221 -
15855479-15855517,15855745-15856033,15856118-15856288,
15856367-15856572
Length = 234
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L FE N+++
Sbjct: 189 FPVKQQIGDQCRFHVCHNMRLLYREKVKTLAEFEAMMNTYY 229
>02_03_0121 + 15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 168 HVILMA*HVFIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFE 296
H L+ VF VK Q D C ++ C+N +L + L FE
Sbjct: 1319 HDTLIHKKVFPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFE 1361
>10_03_0036 -
7286425-7286463,7286686-7286974,7287306-7288192,
7288280-7288726,7288805-7288830,7288984-7289512
Length = 738
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C + C+N +L + L FE N+++
Sbjct: 693 FSVKQQIGDQCGFYVCHNMRLLYREKVKTLAEFEAMMNTYY 733
>09_02_0516 -
10136400-10136516,10136606-10136894,10137578-10138110,
10138719-10138892,10138898-10138903
Length = 372
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +3
Query: 159 KLLHVILMA*HVFIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFE 296
K H IL+ F VK Q D C ++ C+N +L + L FE
Sbjct: 289 KTRHHILIHKKDFPVKQQIGDQCGFHVCHNMRLLYKEKVKTLTGFE 334
>04_01_0347 -
4546566-4546604,4546710-4546748,4546834-4547059,
4547222-4547374,4547453-4547706,4547734-4548366,
4548453-4548899,4548978-4549277,4549386-4549697,
4550190-4550243
Length = 818
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFE 296
F+VK Q D C ++ C+N +L + L FE
Sbjct: 760 FLVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFE 793
>12_02_1226 - 27182423-27182768,27182855-27183765
Length = 418
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = -1
Query: 291 KKTINKWSDVLTIYNYNNNS 232
KKT+++WSD Y+Y +NS
Sbjct: 348 KKTVDEWSDEKKSYDYKSNS 367
>05_07_0317 -
29193940-29193978,29194208-29194496,29194579-29194749,
29194829-29195715,29195803-29196249,29196328-29197056
Length = 853
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 195 FIVKAQGADDCSWNYCYNYKLSIHHSIC*LFSFEKNNNSFH 317
F VK Q D C ++ C+N +L + L F+ N+++
Sbjct: 808 FPVKQQIGDQCGFHVCHNMRLLYREKVKTLAEFKAMMNTYY 848
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,332,362
Number of Sequences: 37544
Number of extensions: 298544
Number of successful extensions: 661
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -