Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0273
         (693 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)                   30   2.0  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                28   6.2  

>SB_21549| Best HMM Match : SNF (HMM E-Value=2.3e-18)
          Length = 515

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 488 KLITHYVC--SMLCCFVNIYIIAWSVYILF 571
           K I + +C  S LCC   I I+AW+ Y LF
Sbjct: 364 KGIGYAICMISYLCCIYYIVILAWTFYYLF 393


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 124 PCTLFWLLPLLINYCTLF*WHNMY 195
           P    W+LP++  YC++   HNM+
Sbjct: 349 PLASSWILPVIQGYCSIVHCHNMF 372


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,092,530
Number of Sequences: 59808
Number of extensions: 388194
Number of successful extensions: 867
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)