Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0273
         (693 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical pr...    28   5.5  

>Z99288-5|CAB16548.2|  336|Caenorhabditis elegans Hypothetical
           protein ZK262.6 protein.
          Length = 336

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/65 (27%), Positives = 30/65 (46%)
 Frame = +3

Query: 396 ISPYLRSCQQFRDCTY*KFEMTKDGLI*QNRN**RTTFVVCYAALLISTLLLGVCTYYFG 575
           +S YL  C     C   K      G +   RN     + +    ++ISTL+   C+Y++G
Sbjct: 112 VSYYLGLCLALIRCIIMKMSRNAPGFLSTTRN----GYFLTLFLIIISTLIS--CSYFYG 165

Query: 576 YNLLK 590
           Y ++K
Sbjct: 166 YKIIK 170


>Z83107-7|CAB05501.2|  537|Caenorhabditis elegans Hypothetical
           protein F32A7.6 protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 495 ISFDFVKSGHLSSFRTSNMYNHGT 424
           +SFDFV+ G L + + S  + HGT
Sbjct: 157 VSFDFVRFGDLPTPKNSKEFEHGT 180


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,121,270
Number of Sequences: 27780
Number of extensions: 304845
Number of successful extensions: 821
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)