Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0273
         (693 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62380.1 68416.m07007 hypothetical protein weak similarity to...    31   0.73 
At5g05510.1 68418.m00598 protein kinase-related low similarity t...    27   8.9  

>At3g62380.1 68416.m07007 hypothetical protein weak similarity to S
           locus F-box (SLF)-S2 protein [Antirrhinum hispanicum]
           GI:13161526
          Length = 325

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +2

Query: 95  VHIVTTPYRRPAPYSGYSRYL*I--IARYFNGITCIY 199
           ++I    Y  P PY  YS Y  +  I  Y NGI CIY
Sbjct: 49  INIFIHSYTSPVPYPKYSTYDTVGQIMGYCNGIVCIY 85


>At5g05510.1 68418.m00598 protein kinase-related low similarity to
           SP|O60566 Mitotic checkpoint serine/threonine-protein
           kinase BUB1 beta (EC 2.7.1.-) {Homo sapiens}
          Length = 471

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 486 DFVKSGHLSSFRTSNMYNHGTVDMTVNMEKCNRTIS 379
           +FV    +      N  +HG VD T+NM++   TI+
Sbjct: 186 NFVDKAIVGKPEAENACHHGLVDPTINMKEAMNTIN 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,628
Number of Sequences: 28952
Number of extensions: 260692
Number of successful extensions: 606
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)