Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0272
         (692 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   5.5  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.2  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.2  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.2  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.2  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    21   7.2  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    21   9.6  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    21   9.6  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    21   9.6  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +3

Query: 285 LFYQLQVHFNVIYYKTQMFFTSALYREITVIVFLFHKIEFLILFQCIFL 431
           LFY + +    IYY    F    ++  + V ++ F+ +   +LF C F+
Sbjct: 227 LFYCVLIILLCIYYFYYAFILFTVHLLLLVCIYYFYYMH--LLFCCAFI 273


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 508 DLNVNQCKPN 537
           +LNV+ CKPN
Sbjct: 220 ELNVDDCKPN 229


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 548 SGCKLGLHWFTFKSFH 501
           S CK+ + WF F   H
Sbjct: 126 STCKMDITWFPFDDQH 141


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 548 SGCKLGLHWFTFKSFH 501
           S CK+ + WF F   H
Sbjct: 126 STCKMDITWFPFDDQH 141


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 548 SGCKLGLHWFTFKSFH 501
           S CK+ + WF F   H
Sbjct: 126 STCKMDITWFPFDDQH 141


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 548 SGCKLGLHWFTFKSFH 501
           S CK+ + WF F   H
Sbjct: 126 STCKIDITWFPFDDQH 141


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -1

Query: 548 SGCKLGLHWFTFKSFH 501
           S CK+ + WF F   H
Sbjct: 126 STCKMDITWFPFDDQH 141


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 ARIFFLKTKIIISAVGTTTFDL 608
           A +F++ T +++  VG   FD+
Sbjct: 91  AYVFYVVTTVLVVLVGYERFDI 112


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 ARIFFLKTKIIISAVGTTTFDL 608
           A +F++ T +++  VG   FD+
Sbjct: 91  AYVFYVVTTVLVVLVGYERFDI 112


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 543 ARIFFLKTKIIISAVGTTTFDL 608
           A +F++ T +++  VG   FD+
Sbjct: 91  AYVFYVVTTVLVVLVGYERFDI 112


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,673
Number of Sequences: 336
Number of extensions: 3144
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)