Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0272
(692 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein. 24 1.6
EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein. 24 1.6
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.8
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 23 2.8
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 21 8.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 21 8.4
>EF625897-1|ABR45904.1| 684|Apis mellifera hexamerin protein.
Length = 684
Score = 23.8 bits (49), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 77 RHFSHHTFISI*FHLKYFY 133
++ SHH I I LKYFY
Sbjct: 523 KYDSHHKLIEIPEDLKYFY 541
>EF591128-1|ABQ59246.1| 684|Apis mellifera hexamerin 70a protein.
Length = 684
Score = 23.8 bits (49), Expect = 1.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 77 RHFSHHTFISI*FHLKYFY 133
++ SHH I I LKYFY
Sbjct: 523 KYDSHHKLIEIPEDLKYFY 541
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 498 LLDCYLKFYCI*IISG*LWYVVVKICIEIKSR 403
+L C+ Y I I++ L+Y++V + I++ R
Sbjct: 106 VLSCWTNIYYIIILAWALFYLLVSLRIDLPWR 137
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 23.0 bits (47), Expect = 2.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = -3
Query: 498 LLDCYLKFYCI*IISG*LWYVVVKICIEIKSR 403
+L C+ Y I I++ L+Y++V + I++ R
Sbjct: 159 VLSCWTNIYYIIILAWALFYLLVSLRIDLPWR 190
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 109 STCKIDIAWFPFDDQH 124
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 109 STCKIDITWFPFDDQH 124
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 109 STCKIDIAWFPFDDQH 124
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 109 STCKMDIAWFPFDDQH 124
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 109 STCKIDITWFPFDDQH 124
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 177 STCKIDITWFPFDDQH 192
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 21.4 bits (43), Expect = 8.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = -1
Query: 548 SGCKLGLHWFTFKSFH 501
S CK+ + WF F H
Sbjct: 177 STCKIDITWFPFDDQH 192
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,850
Number of Sequences: 438
Number of extensions: 3054
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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