Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0272
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 fam...    30   1.3  
At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 fam...    27   8.9  

>At4g25350.1 68417.m03648 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 745

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = +3

Query: 264 TQLINIFLFYQLQV----HFNVIYYKTQMFFTSALYREITVIVFLFHKIEFLI 410
           T+LI +FL   + +     FN++Y  ++ FF S L+R I    +  H  +F +
Sbjct: 463 TELIPLFLLVLVIIIVLCPFNILYRSSRFFFLSVLFRCIAAPFYAVHLPDFFL 515


>At2g03250.1 68415.m00278 EXS family protein / ERD1/XPR1/SYG1 family
           protein similar to  PHO1 protein [Arabidopsis thaliana]
           GI:20069032; contains Pfam profiles PF03105: SPX domain,
           PF03124: EXS family
          Length = 756

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 252 HQK*TQLINIFL----FYQLQVHFNVIYYKTQMFFTSALYREITVIVFLFHKIEFLILFQ 419
           +Q  T+L+ +FL    F  L V FN+ Y  ++ FF + L+  +   ++     +F +  Q
Sbjct: 472 YQALTELLPLFLLIAMFVVLVVPFNIFYRSSRFFFLTTLFHMLAAPLYKVTLPDFFLADQ 531


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,344,782
Number of Sequences: 28952
Number of extensions: 213511
Number of successful extensions: 266
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)