Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0271
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    29   0.63 
SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr...    29   0.63 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    29   0.84 
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    26   5.9  
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar...    25   7.8  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
           Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -3

Query: 457 WIWKIICPKRYFIFLAPQISCS*NYSKTSTVFN 359
           W +KI+ PK+Y++   PQI+ S N    S ++N
Sbjct: 701 WGFKILIPKKYYVRYPPQIT-SFNPQHDSRIYN 732


>SPCC1827.03c |||acetyl-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 393 EQLICGAKNMKYRFGQIIFHIHDCFRYIVCLPEKDLCSTRP 515
           ++ ICG  N  Y+  +  F+I D    +V +PE  + +  P
Sbjct: 75  QRAICGPLNSNYKQSEFEFYIDDLKSKLVIVPEGSVAANTP 115


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 264 LRTRVTVFTSARHVNYNFASFRANFNGGFMKLLNTVEV 377
           LR  V V    ++ N  FAS+     G +M+LLN  EV
Sbjct: 478 LRLSVDVILGMQNENLGFASYEPARTGEWMELLNPAEV 515


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 681 ARSERDNPPNQLFLHNSSVELLPM*RAKAQVARSLPF 571
           A S + N P   F H+S + L P+  +   VA SL F
Sbjct: 253 ANSPQSNTPLSTFRHSSPLSLSPVITSDNDVANSLFF 289


>SPAC8F11.07c |cdc24||DNA replication protein
           Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 132 RIKILDSNSVLLYFQYDYLCN--CMNS*NNESIGIKNNVNYSCL 7
           R+KIL SNS   YF+  Y+ +  C++  N+ S    N  +YSC+
Sbjct: 309 RVKILYSNSQKHYFKDTYIGDLLCISPINHSS---DNLSDYSCV 349


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,770
Number of Sequences: 5004
Number of extensions: 53456
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)